Abstract is missing.
- Phylogenetics of Heterogeneous Samples - (Keynote Talk)Russell Schwartz. 1 [doi]
- OMG! Orthologs for Multiple Genomes - Competing Formulations - (Keynote Talk)David Sankoff. 2-3 [doi]
- Phylogenetic Analysis of Whole Genomes - (Keynote Talk)Bernard M. E. Moret. 4-7 [doi]
- Genetic and Pharmacogenetic Studies of Neuropsychiatric Disorders: Increasingly Critical Roles of Bioinformatics Research and Applications - (Keynote Talk)Liping Wei. 8-10 [doi]
- Genome-Phenome Association Analysis of Complex Diseases a Structured Sparse Regression Approach - (Keynote Talk)Eric Xing. 11 [doi]
- Prediction of Essential Proteins by Integration of PPI Network Topology and Protein Complexes InformationJun Ren, Jianxin Wang, Min Li, Huan Wang, Binbin Liu. 12-24 [doi]
- Computing the Protein Binding SitesFei Guo, Lusheng Wang. 25-36 [doi]
- SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity AlgorithmDavid Hoksza, Daniel Svozil. 37-48 [doi]
- Prediction of Essential Genes by Mining Gene Ontology SemanticsYu-cheng Liu, Po-I. Chiu, Hsuan-Cheng Huang, Vincent S. Tseng. 49-60 [doi]
- High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUsXiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu. 61-72 [doi]
- Component-Based Matching for Multiple Interacting RNA SequencesGhada Badr, Marcel Turcotte. 73-86 [doi]
- A New Method for Identifying Essential Proteins Based on Edge Clustering CoefficientHuan Wang, Min Li, Jianxin Wang, Yi Pan. 87-98 [doi]
- Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant GenomesChunfang Zheng, David Sankoff. 99-110 [doi]
- Algorithms to Detect Multiprotein Modularity Conserved during EvolutionLuqman Hodgkinson, Richard M. Karp. 111-122 [doi]
- The Kernel of Maximum Agreement SubtreesKrister M. Swenson, Eric Chen, Nicholas D. Pattengale, David Sankoff. 123-135 [doi]
- A Consensus Approach to Predicting Protein Contact Map via Logistic RegressionJian-Yi Yang, Xin Chen. 136-147 [doi]
- A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene TreesPawel Górecki, Oliver Eulenstein. 148-159 [doi]
- Comprehensive Pharmacogenomic Pathway Screening by Data AssimilationTakanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano. 160-171 [doi]
- The Deep Coalescence Consensus Tree Problem is Pareto on ClustersHarris T. Lin, J. Gordon Burleigh, Oliver Eulenstein. 172-183 [doi]
- Fast Local Search for Unrooted Robinson-Foulds SupertreesRuchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca. 184-196 [doi]
- A Metric for Phylogenetic Trees Based on MatchingYu Lin, Vaibhav Rajan, Bernard M. E. Moret. 197-208 [doi]
- Describing the Orthology Signal in a PPI Network at a Functional, Complex LevelPavol Jancura, Eleftheria Mavridou, Beatriz Pontes, Elena Marchiori. 209-226 [doi]
- Algorithms for Rapid Error Correction for the Gene Duplication ProblemRuchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein. 227-239 [doi]
- TransDomain: A Transitive Domain-Based Method in Protein-Protein Interaction PredictionYi-Tsung Tang, Hung-Yu Kao. 240-252 [doi]
- Rapid and Accurate Generation of Peptide Sequence Tags with a Graph Search ApproachHui Li, Lauren Scott, Chunmei Liu, Mugizi Rwebangira, Legand Burge, William M. Southerland. 253-261 [doi]
- ::::In Silico:::: Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene TransferVadim Mozhayskiy, Ilias Tagkopoulos. 262-273 [doi]
- Comparative Evaluation of Set-Level Techniques in Microarray ClassificationJirí Kléma, Matej Holec, Filip Zelezný, Jakub Tolar. 274-285 [doi]
- Gene Network Modules-Based Liner Discriminant Analysis of Microarray Gene Expression DataPingzhao Hu, Shelley B. Bull, Hui Jiang. 286-296 [doi]
- A Polynomial Algebra Method for Computing Exemplar Breakpoint DistanceBin Fu, Louxin Zhang. 297-305 [doi]
- The Maximum Clique Enumeration Problem: Algorithms, Applications and ImplementationsJohn D. Eblen, Charles A. Phillips, Gary L. Rogers, Michael A. Langston. 306-319 [doi]
- Query-Adaptive Ranking with Support Vector Machines for Protein Homology PredictionYan Fu, Rong Pan, Qiang Yang, Wen Gao. 320-331 [doi]
- A Novel Core-Attachment Based Greedy Search Method for Mining Functional Modules in Protein Interaction NetworksChaojun Li, Jieyue He, Baoliu Ye, Wei Zhong. 332-343 [doi]
- ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory NetworksXiuwei Zhang, Bernard M. E. Moret. 344-357 [doi]
- Prediction of DNA-Binding Propensity of Proteins by the Ball-Histogram MethodAndrea Szabóová, Ondrej Kuzelka, Sergio Morales E., Filip Zelezný, Jakub Tolar. 358-367 [doi]
- Multi-label Correlated Semi-supervised Learning for Protein Function PredictionJonathan Q. Jiang. 368-379 [doi]
- Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNAFelipe Lessa, Daniele Martins Neto, Kátia Guimarães, Marcelo M. Brigido, Maria Emilia Telles Walter. 380-391 [doi]
- Accurate Estimation of Gene Expression Levels from DGE Sequencing DataMarius Nicolae, Ion I. Mandoiu. 392-403 [doi]
- An Integrative Approach for Genomic Island Prediction in Prokaryotic GenomesHan Wang, John Fazekas, Matthew Booth, Qi Liu, Dongsheng Che. 404-415 [doi]
- A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract)Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston. 416-427 [doi]
- Mining Biological Interaction Networks Using Weighted Quasi-BicliquesWen-Chieh Chang 0002, Sudheer Vakati, Roland Krause, Oliver Eulenstein. 428-439 [doi]
- Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character TreesJán Manuch, Murray Patterson, Arvind Gupta. 440-451 [doi]