Table of Contents

• Parallel Multilevel Sparse Approximate Inverse Preconditioners in Large Sparse Matrix ComputationsKai Wang, Jun Zhang, Chi Shen. 1 [doi]
• Performance evaluation and tuning of GRAPE-6 - towards 40 real TflopsJunichiro Makino, Eiichiro Kokubo, Toshiyuki Fukushige. 2 [doi]
• Efficient, Unified, and Scalable Performance Monitoring for Multiprocessor Operating SystemsRobert W. Wisniewski, Bryan S. Rosenburg. 3 [doi]
• A 14.6 billion degrees of freedom, 5 teraflops, 2.5 terabyte earthquake simulation on the Earth SimulatorDimitri Komatitsch, Seiji Tsuboi, Chen Ji, Jeroen Tromp. 4 [doi]
• Dyn-MPI: Supporting MPI on Non Dedicated ClustersD. Brent Weatherly, David K. Lowenthal, Mario Nakazawa, Franklin Lowenthal. 5 [doi]
• ParADE: An OpenMP Programming Environment for SMP Cluster SystemsYang-Suk Kee, Jin-Soo Kim, Soonhoi Ha. 6 [doi]
• Handling Heterogeneity in Shared-Disk File SystemsChangxun Wu, Randal C. Burns. 7 [doi]
• Compiler Support for Exploiting Coarse-Grained Pipelined ParallelismWei Du, Renato Ferreira, Gagan Agrawal. 8 [doi]
• Optimizing Reduction Computations In a Distributed EnvironmentTahsin M. Kurç, Feng Lee, Gagan Agrawal, Ümit V. Çatalyürek, Renato Ferreira, Joel H. Saltz. 9 [doi]
• Improving the Scalability of Parallel Jobs by adding Parallel Awareness to the Operating SystemTerry Jones, Shawn Dawson, Rob Neely, William G. Tuel Jr., Larry Brenner, Jeffrey Fier, Robert Blackmore, Patrick Caffrey, Brian Maskell, Paul Tomlinson, Mark Roberts. 10 [doi]
• A Compiler Analysis of Interprocedural Data CommunicationYonghua Ding, Zhiyuan Li. 11 [doi]
• Nondeterministic Queries in a Relational Grid Information ServicePeter A. Dinda, Dong Lu. 12 [doi]
• Parallel Iterative Solvers of GeoFEM with Selective Blocking Preconditioning for Nonlinear Contact Problems on the Earth SimulatorKengo Nakajima. 13 [doi]
• A New Parallel Kernel-Independent Fast Multipole MethodLexing Ying, George Biros, Denis Zorin, Harper Langston. 14 [doi]
• Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics SimulationsMakoto Taiji, Tetsu Narumi, Yousuke Ohno, Noriyuki Futatsugi, Atsushi Suenaga, Naoki Takada, Akihiko Konagaya. 15 [doi]
• Synthesizing Realistic Computational GridsDong Lu, Peter A. Dinda. 16 [doi]
• Memory Profiling using Hardware CountersMarty Itzkowitz, Brian J. N. Wylie, Christopher Aoki, Nicolai Kosche. 17 [doi]
• Early Evaluation of the Cray X1Thomas H. Dunigan, Mark R. Fahey, James B. White III, Patrick H. Worley. 18 [doi]
• The Tool Dæmon Protocol (TDP)Barton P. Miller, Ana Cortés, Miquel A. Senar, Miron Livny. 19 [doi]
• A Million-Fold Speed Improvement in Genomic Repeats DetectionJohn W. Romein, Jaap Heringa, Henri E. Bal. 20 [doi]
• MRNet: A Software-Based Multicast/Reduction Network for Scalable ToolsPhilip C. Roth, Dorian C. Arnold, Barton P. Miller. 21 [doi]
• A Configurable Network Protocol for Cluster Based Communications using Modular Hardware Primitives on an Intelligent NICRanjesh G. Jaganathan, Keith D. Underwood, Ron Sass. 22 [doi]
• SCALLOP: A Highly Scalable Parallel Poisson Solver in Three DimensionsGregory T. Balls, Scott B. Baden, Phillip Colella. 23 [doi]
• Grid -Based Parallel Data Streaming implemented for the Gyrokinetic Toroidal CodeScott Klasky, Stéphane Ethier, Zhihong Lin, K. Martins, Douglas McCune, Ravi Samtaney. 24 [doi]
• MPICH-V2: a Fault Tolerant MPI for Volatile Nodes based on Pessimistic Sender Based Message LoggingAurelien Bouteiller, Franck Cappello, Thomas Hérault, Géraud Krawezik, Pierre Lemarinier, Frédéric Magniette. 25 [doi]
• Applications of Algebraic Multigrid to Large-Scale Finite Element Analysis of Whole Bone Micro-Mechanics on the IBM SPMark F. Adams, Harun H. Bayraktar, Tony M. Keaveny, Panayiotis Papadopoulos. 26 [doi]
• Quantifying and Improving the Availability of High-Performance Cluster-Based Internet ServicesKiran Nagaraja, Neeraj Krishnan, Ricardo Bianchini, Richard P. Martin, Thu D. Nguyen. 27 [doi]
• Hierarchical Dynamics, Interarrival Times, and PerformanceStephen D. Kleban, Scott H. Clearwater. 28 [doi]
• Parallel Particle-In-Cell Simulation of Colliding Beams in High Energy AcceleratorsJi Qiang, Miguel A. Furman, Robert Ryne. 29 [doi]
• The Space Simulator: Modeling the Universe from Supernovae to CosmologyMichael S. Warren, Chris L. Fryer, M. Patrick Goda. 30 [doi]
• Conservative Scheduling: Using Predicted Variance to Improve Scheduling Decisions in Dynamic EnvironmentsLingyun Yang, Jennifer M. Schopf, Ian T. Foster. 31 [doi]
• IPSAP: A High-performance Parallel Finite Element Code for Large-scale Structural Analysis Based on Domain-wise Multifrontal TechniqueSeung Jo Kim, Chang Sung Lee, Jeong-Ho Kim, Minsu Joh, Sangsan Lee. 32 [doi]
• A Metadata Catalog Service for Data Intensive ApplicationsGurmeet Singh, Shishir Bharathi, Ann L. Chervenak, Ewa Deelman, Carl Kesselman, Mary Manohar, Sonal Patil, Laura Pearlman. 33 [doi]
• Remote Visualization by Browsing Image Based Databases with Logistical NetworkingJin Ding, Jian Huang, Micah Beck, Shaotao Liu, Terry Moore, Stephen Soltesz. 34 [doi]
• Merrimac: Supercomputing with StreamsWilliam J. Dally, Francois Labonte, Abhishek Das, Pat Hanrahan, Jung Ho Ahn, Jayanth Gummaraju, Mattan Erez, Nuwan Jayasena, Ian Buck, Timothy J. Knight, Ujval J. Kapasi. 35 [doi]
• HPC.NET - are CLI-based Virtual Machines Suitable for High Performance Computing?Werner Vogels. 36 [doi]
• GridSAT: A Chaff-based Distributed SAT Solver for the GridWahid Chrabakh, Richard Wolski. 37 [doi]
• Evaluation of Cache-based Superscalar and Cacheless Vector Architectures for Scientific ComputationsLeonid Oliker, Andrew Canning, Jonathan Carter, John Shalf, David Skinner, Stéphane Ethier, Rupak Biswas, M. Jahed Djomehri, Rob F. Van der Wijngaart. 38 [doi]
• Parallel netCDF: A High-Performance Scientific I/O InterfaceJianwei Li, Wei-keng Liao, Alok N. Choudhary, Robert B. Ross, Rajeev Thakur, William Gropp, Robert Latham, Andrew Siegel, Brad Gallagher, Michael Zingale. 39 [doi]
• Traffic-based Load Balance for Scalable Network EmulationXin Liu, Andrew A. Chien. 40 [doi]
• Enabling the Efficient Use of SMP Clusters: The GAMESS/DDI ModelRyan M. Olson, Michael W. Schmidt, Mark S. Gordon, Alistair P. Rendell. 41 [doi]
• A Self-Organizing Flock of CondorsAli Raza Butt, Rongmei Zhang, Y. Charlie Hu. 42 [doi]
• The Livny and Plank-Beck Problems: Studies in Data Movement on the Computational GridMatthew S. Allen, Richard Wolski. 43 [doi]
• Job Superscheduler Architecture and Performance in Computational Grid EnvironmentsHongzhang Shan, Leonid Oliker, Rupak Biswas. 44 [doi]
• An Evaluation of a Framework for the Dynamic Load Balancing of Highly Adaptive and Irregular Parallel ApplicationsKevin Barker, Nikos Chrisochoides. 45 [doi]
• Early Experience with Scientific Programs on the Cray MTA-2Wendell Anderson, Preston Briggs, C. Stephen Hellberg, Daryl W. Hess, Alexei M. Khokhlov, Marco Lanzagorta, Robert Rosenberg. 46 [doi]
• Grid-Based Galaxy Morphology Analysis for the National Virtual ObservatoryEwa Deelman, Raymond Plante, Carl Kesselman, Gurmeet Singh, Mei-Hui Su, Gretchen Greene, Robert J. Hanisch, Niall Gaffney, Antonio Volpicelli, James Annis, Vijay Sekhri, Tamas Budavari, María A. Nieto-Santisteban, William O Mullane, David Bohlender, Tom McGlynn, Arnold H. Rots, Olga Pevunova. 47 [doi]
• Visualizing Very Large-Scale Earthquake SimulationsKwan-Liu Ma, Aleksander Stompel, Jacobo Bielak, Omar Ghattas, Eui Joong Kim. 48 [doi]
• Identifying and Exploiting Spatial Regularity in Data Memory ReferencesTushar Mohan, Bronis R. de Supinski, Sally A. McKee, Frank Mueller, Andy Yoo, Martin Schulz. 49 [doi]
• Optimizing 10-Gigabit Ethernet for Networks of Workstations, Clusters, and Grids: A Case StudyWu-chun Feng, Justin Gus Hurwitz, Harvey B. Newman, Sylvain Ravot, Roger Les Cottrell, Olivier Martin, Fabrizio Coccetti, Cheng Jin, David X. Wei, Steven H. Low. 50 [doi]
• Automatic Type-Driven Library Generation for Telescoping LanguagesArun Chauhan, Cheryl McCosh, Ken Kennedy, Richard Hanson. 51 [doi]
• High Resolution Forward And Inverse Earthquake Modeling on Terascale ComputersVolkan Akcelik, Jacobo Bielak, George Biros, Ioannis Epanomeritakis, Antonio Fernandez, Omar Ghattas, Eui Joong Kim, Julio C. López, David R. O Hallaron, Tiankai Tu, John Urbanic. 52 [doi]
• An Efficient Data Location Protocol for Self.organizing Storage ClustersHong Tang, Tao Yang. 53 [doi]
• Scalable Hardware-Based Multicast TreesSalvador Coll, José Duato, Fabrizio Petrini, Francisco J. Mora. 54 [doi]
• The Case of the Missing Supercomputer Performance: Achieving Optimal Performance on the 8, 192 Processors of ASCI QFabrizio Petrini, Darren J. Kerbyson, Scott Pakin. 55 [doi]
• Multi-Constraint Mesh Partitioning for Contact/Impact ComputationsGeorge Karypis. 56 [doi]
• BCS-MPI: A New Approach in the System Software Design for Large-Scale Parallel ComputersJuan Fernández, Eitan Frachtenberg, Fabrizio Petrini. 57 [doi]
• Performance Comparison of MPI Implementations over InfiniBand, Myrinet and QuadricsJiuxing Liu, B. Chandrasekaran, Jiesheng Wu, Weihang Jiang, Sushmitha P. Kini, Weikuan Yu, Darius Buntinas, Pete Wyckoff, Dhabaleswar K. Panda. 58 [doi]
• Scalable NIC-based Reduction on Large-scale ClustersAdam Moody, Juan Fernández, Fabrizio Petrini, Dhabaleswar K. Panda. 59 [doi]
• Fast Parallel Non-Contiguous File AccessJoachim Worringen, Jesper Larsson Träff, Hubert Ritzdorf. 60 [doi]
• Application Steering in a Collaborative EnvironmentJohn Brooke, Thomas Eickermann, Uwe Wössner. 61 [doi]
• Communities Collaborating to Bridge the Digital Divide: The Tribal Virtual NetworkMaria Williams, Vernon Lujan, Ron Solimon, Lorene Willis, Tom Kennedy, Kevin Shendo, Julie Frendle, Barbara Tracy, Sam Catanach, Jeffery Edaakie, Arlan Sando, Jacqui Velarde. 62 [doi]