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2012

System identification of the fermentation system of Thermoanaerobacter sp. X514Jing Yang 0006, Xiaofang Ling, Lishan Yao, Hua-Liang Wei, Visakan Kadirkamanathan. isb 2012: 158-163 [doi]

6th IEEE International Conference on Systems Biology, ISB 2012, Xian, China, August 18-20, 2012IEEE, 2012. [doi]

BAsplice: Bi-direction alignment for detecting splice junctionsJingde Bu, Jiayan Wu, Meili Chen, Jing-Fa Xiao, Jun Yu, Xuebin Chi, Zhong Jin. isb 2012: 252-255 [doi]

RNA-seq coverage effects on biological pathways and GO tag cloudsChien-Ming Chen, Tsan-Huang Shih, Tun-Wen Pai, Zhen-Long Liu, Margaret Dah-Tsyr Chang. isb 2012: 240-245 [doi]

An integrative framework for identifying consistent microRNA expression signatures associated with clear cell renal cell carcinomaJiajia Chen, Daqing Zhang, Wenyu Zhang, Yifei Tang, Lingchuan Guo, Bairong Shen. isb 2012: 37-42 [doi]

Analysis of morphological evolution in a long-term experiment with Escherichia coliFangshu Cui, Bo Yuan. isb 2012: 211-215 [doi]

ppiPre - an R package for predicting protein-protein interactionsYue Deng, Lin Gao. isb 2012: 333-337 [doi]

Sparse kernel logistic regression for β-turns predictionMurtada Khalafallah Elbashir, Jianxin Wang, Fang-Xiang Wu, Min Li. isb 2012: 246-251 [doi]

A machine learning framework of functional biomarker discovery for different microbial communities based on metagenomic dataWei Fang, Xingzhi Chang, Xiaoquan Su, Jian Xu, Deli Zhang, Kang Ning. isb 2012: 106-112 [doi]

Identification of oncogenic genes for colon adenocarcinoma from genomics dataChanghe Fu, Ling Jing, Su Deng, Guangxu Jin. isb 2012: 263-266 [doi]

A novel pipeline for motif discovery, pruning and validation in promoter sequences of human tissue specific genesXiujun Gong, Hua Yu, Fei-Fei Zhao. isb 2012: 43-48 [doi]

Using NMFAS to identify key biological pathways associated with human diseasesHao Guo, Yunping Zhu, Dong Li, Fuchu He, Qijun Liu. isb 2012: 79-85 [doi]

Predicting protein-RNA residue-base contacts using two-dimensional conditional random fieldMorihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu. isb 2012: 152-157 [doi]

Identifying novel glioma associated pathways based on integrated 'omics' dataYangfan Hu, Jinquan Li, Jiajia Chen, Guang Hu, Bairong Shen. isb 2012: 49-55 [doi]

Comparative analysis of protein-coding genes and long non-coding RNAs of prostate cancer between Caucasian and Chinese populationsFu-Yan Hu, Xing-Ming Zhao, Nelson L. S. Tang, Yan Zhang, Luonan Chen. isb 2012: 291-296 [doi]

A stable simplification of a fas-signaling pathway model for apoptosisYa-Jing Huang, Wen-An Yong. isb 2012: 125-134 [doi]

CNetA: Network alignment by combining biological and topological featuresQiang Huang, Ling-Yun Wu, Xiang-Sun Zhang. isb 2012: 220-225 [doi]

Dynamics of coexistence of asexual and sexual reproduction in adaptive landscapeShuyun Jiao, Yanbo Wang, Ping Ao. isb 2012: 192-196 [doi]

Anti-clustering of circadian gene expression in mouse liver genomeBin Kang, Yuan-Yuan Li, Yixue Li. isb 2012: 273-279 [doi]

A sequence-segmented method applied to the similarity analysis of proteinsFen Kong, Xu-Ying Nan, Ping-an He, Qi Dai, Yu-Hua Yao. isb 2012: 321-326 [doi]

Metabolite biomarker discovery for metabolic diseases by flux analysisLimin Li, Hao Jiang, Wai-Ki Ching, Vassilios S. Vassiliadis. isb 2012: 1-5 [doi]

Comparing two models based on the transcriptional regulation by KaiC of cyanobacteria rhythmYing Li, Hui Wu, Jinhuo Luo. isb 2012: 216-219 [doi]

A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression dataZhi-Ping Liu, Wanwei Zhang, Katsuhisa Horimoto, Luonan Chen. isb 2012: 142-147 [doi]

Alternating weighted least squares parameter estimation for biological S-systemsLi-Zhi Liu, Fang-Xiang Wu, Wen-Jun Zhang. isb 2012: 6-11 [doi]

Switch-like regulation of signal transduction by small RNA-mediated quorum sensingXi Liu, Peipei Zhou, Ruiqi Wang. isb 2012: 164-168 [doi]

Construction and analysis of genome-wide SNP networksYang Liu, Jin Zhou, Zhi-Ping Liu, Luonan Chen, Michael K. Ng. isb 2012: 327-332 [doi]

A novel feature selection method based on CFS in cancer recognitionXinguo Lu, Xianghua Peng, Ping Liu, Yong Deng, Bingtao Feng, Bo Liao. isb 2012: 226-231 [doi]

Pigmented network structure detection using semi-smart adaptive filtersLeszek A. Nowak, Maciej J. Ogorzalek, Marcin Piotr Pawlowski. isb 2012: 310-314 [doi]

Improving prediction of drug therapy outcome via integration of time series gene expression and Protein Protein Interaction networkLiwei Qian, Haoran Zheng. isb 2012: 12-16 [doi]

Coupled positive feedback loops regulate the biological behaviorFei Shi, Peipei Zhou, Ruiqi Wang. isb 2012: 169-173 [doi]

Functional tunability of biological circuits from tinkersChanghong Shi, Tianshou Zhou. isb 2012: 63-72 [doi]

Analysis of a HBV infection model with ALTYongmei Su, Yerong Wen, Lequan Min. isb 2012: 97-100 [doi]

Application of Granger causality to gene regulatory network discoveryGary Hak Fui Tam, Chunqi Chang, Yeung Sam Hung. isb 2012: 232-239 [doi]

A 3-dimentional multiscale model to simulate tumor progression in response to interactions between cancer stem cells and tumor microenvironmental factorsHua Tan, Fuhai Li, Jaykrishna Singh, Xiaofeng Xia, Derek Cridebring, Jian Yang, Ming Zhan, Stephen T. C. Wong, Jiguang Bao, Jinwen Ma. isb 2012: 297-303 [doi]

Predicting protein complexes via the integration of multiple biological informationXiwei Tang, Jianxin Wang, Yi Pan. isb 2012: 174-179 [doi]

New global stability conditions for genetic regulatory networks with time-varying delaysLi-Ping Tian, Zhong-Ke Shi, Fang-Xiang Wu. isb 2012: 185-191 [doi]

A seed-based approach to identify risk disease sub-networks in human lung cancerYi-Bin Wang, Yongmei Cheng, Shao-Wu Zhang, Wei Chen. isb 2012: 135-141 [doi]

Clinical data analysis reveals three subytpes of gastric cancerXinxin Wang, Zhana Duren, Chao Zhang, Lin Chen, Yong Wang. isb 2012: 315-320 [doi]

A new method to identify repositioned drugs for prostate cancerZikai Wu, Yong Wang, Luonan Chen. isb 2012: 280-284 [doi]

Multi-objective optimization of biological systems represented by S-system modelsGongxian Xu. isb 2012: 92-96 [doi]

cGRNexp: a web platform for building combinatorial gene regulation networks based on user-uploaded gene expression datasetsHuayong Xu, Hui Yu, Kang Tu, Qianqian Shi, Chaochun Wei, Yuanyuan Li, Yixue Li. isb 2012: 113-117 [doi]

Escape from infinite adaptive peakSong Xu, Shuyun Jiao, Pengyao Jiang, Bo Yuan, Ping Ao. isb 2012: 267-272 [doi]

The influence of the basin structure of Boolean networks on their long range correlated dynamicsPeng Xu, Xianghong Wang, Wenbin Liu. isb 2012: 17-21 [doi]

Module of cellular networks in saccharomyces cerevisiaeYueying Yang, Di Liu, Jun Meng. isb 2012: 180-184 [doi]

Network Kernel SVM for microarray classification and gene sets selectionBing Yang, Junyan Tan, Naiyang Deng, Ling Jing. isb 2012: 101-105 [doi]

in silico identification of novel cancer-related genes by comparative genomics of naked mole rat and ratZhiyuan Yang, Yan Zhang, Luonan Chen. isb 2012: 285-290 [doi]

Dynamic miRNA-TF-mRNA circuits in mouse lung developmentXinghuo Ye, Juan Liu, Fang-Xiang Wu. isb 2012: 256-262 [doi]

Effective clustering of microRNA sequences by N-grams and feature weightingYuan Yi, Jihong Guan, Shuigeng Zhou. isb 2012: 203-210 [doi]

New encoding schemes for prediction of protein phosphorylation sitesZimo Yin, Junyan Tan. isb 2012: 56-62 [doi]

Module network rewiring in response to therapyTao Zeng, Ruozhao Wang, Luonan Chen. isb 2012: 197-202 [doi]

A novel information contents based similarity metric for comparing TFBS motifsShaoqiang Zhang, Lifen Jiang, Chuanbin Du, Zhengchang Su. isb 2012: 32-36 [doi]

Hierarchical modular structure in gene coexpression networksShuqin Zhang. isb 2012: 118-124 [doi]

A fixed-point blind source extraction algorithm and its application to ECG data analysisHongjuan Zhang, Zikai Wu, Shuxue Ding, Luonan Chen. isb 2012: 73-78 [doi]

Identifying mutated core modules in glioblastoma by integrative network analysisJunhua Zhang, Shi-Hua Zhang, Yong Wang, Junfei Zhao, Xiang-Sun Zhang. isb 2012: 304-309 [doi]

Human encoded miRNAs that regulate the inflenenza virus genomeHao Zhang, Xin Li, Yuanning Liu, Zhi Li, Minggang Hu, Dong Xu. isb 2012: 22-25 [doi]

A comparison of three weighted human gene functional association networksJing Zhao, Chun-Lin Wang, Tinghong Yang, Bo Li, Xing Chen, Xiaona Shen, Ling Fang. isb 2012: 26-31 [doi]

Network clustering along diabetes progression in three tissues of Goto-Kakizaki ratsXinrong Zhou, Katsuhisa Horimoto, Shigeru Saito, Luonan Chen, Huarong Zhou. isb 2012: 86-91 [doi]

Analysis of a HBV infection model with non-cytolytic cure processXinjian Zhuo. isb 2012: 148-151 [doi]

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