SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping

Damla Senol Cali, Konstantinos Kanellopoulos, Joël Lindegger, Zülal Bingöl, Gurpreet S. Kalsi, Ziyi Zuo, Can Firtina, Meryem Banu Cavlak, Jeremie Kim, Nika Mansouri-Ghiasi, Gagandeep Singh 0002, Juan Gómez-Luna, Nour Almadhoun Alserr, Mohammed Alser, Sreenivas Subramoney, Can Alkan, Saugata Ghose, Onur Mutlu. SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping. In Valentina Salapura, Mohamed Zahran 0001, Fred Chong, Lingjia Tang, editors, ISCA '22: The 49th Annual International Symposium on Computer Architecture, New York, New York, USA, June 18 - 22, 2022. pages 638-655, ACM, 2022. [doi]

@inproceedings{CaliKLBKZFCKM0G22,
  title = {SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping},
  author = {Damla Senol Cali and Konstantinos Kanellopoulos and Joël Lindegger and Zülal Bingöl and Gurpreet S. Kalsi and Ziyi Zuo and Can Firtina and Meryem Banu Cavlak and Jeremie Kim and Nika Mansouri-Ghiasi and Gagandeep Singh 0002 and Juan Gómez-Luna and Nour Almadhoun Alserr and Mohammed Alser and Sreenivas Subramoney and Can Alkan and Saugata Ghose and Onur Mutlu},
  year = {2022},
  doi = {10.1145/3470496.3527436},
  url = {https://doi.org/10.1145/3470496.3527436},
  researchr = {https://researchr.org/publication/CaliKLBKZFCKM0G22},
  cites = {0},
  citedby = {0},
  pages = {638-655},
  booktitle = {ISCA '22: The 49th Annual International Symposium on Computer Architecture, New York, New York, USA, June 18 - 22, 2022},
  editor = {Valentina Salapura and Mohamed Zahran 0001 and Fred Chong and Lingjia Tang},
  publisher = {ACM},
  isbn = {978-1-4503-8610-4},
}