ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-efficient Genome Analysis

Can Firtina, Kamlesh R. Pillai, Gurpreet S. Kalsi, Bharathwaj Suresh, Damla Senol Cali, Jeremie S. Kim, Taha Shahroodi, Meryem Banu Cavlak, Joël Lindegger, Mohammed Alser, Juan Gómez-Luna, Sreenivas Subramoney, Onur Mutlu. ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-efficient Genome Analysis. TACO, 21(1), March 2024. [doi]

@article{FirtinaPKSCKSCLAGSM24,
  title = {ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-efficient Genome Analysis},
  author = {Can Firtina and Kamlesh R. Pillai and Gurpreet S. Kalsi and Bharathwaj Suresh and Damla Senol Cali and Jeremie S. Kim and Taha Shahroodi and Meryem Banu Cavlak and Joël Lindegger and Mohammed Alser and Juan Gómez-Luna and Sreenivas Subramoney and Onur Mutlu},
  year = {2024},
  month = {March},
  doi = {10.1145/3632950},
  url = {https://doi.org/10.1145/3632950},
  researchr = {https://researchr.org/publication/FirtinaPKSCKSCLAGSM24},
  cites = {0},
  citedby = {0},
  journal = {TACO},
  volume = {21},
  number = {1},
}