Kirk E. Jordan - researchr alias

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Viewing Publication 1 - 39 from 39

2022

Roughness of Molecular Property Landscapes and Its Impact on ModellabilityMatteo Aldeghi, David E. Graff, Nathan C. Frey, Joseph A. Morrone, Edward O. Pyzer-Knapp, Kirk E. Jordan, Connor W. Coley. jcisd, 62(19):4660-4671, 2022. [doi]

Self-Focusing Virtual Screening with Active Design Space PruningDavid E. Graff, Matteo Aldeghi, Joseph A. Morrone, Kirk E. Jordan, Edward O. Pyzer-Knapp, Connor W. Coley. jcisd, 62(16):3854-3862, 2022. [doi]

2021

Simulation of large molecular systems with electronically-derived forcesJony Castangna, Fausto Martelli, Kirk E. Jordan, Jason Crain. cphysics, 264:107959, 2021. [doi]

2018

An Asynchronous Two-Level Checkpointing Method to Solve Adjoint Problems on Hierarchical Memory SpacesDebanjan Datta, David Appelhans, Constantinos Evangelinos, Kirk E. Jordan. cse, 20(4):39-55, 2018. [doi]

Improving Performance and Energy Efficiency on OpenPower Systems Using Scalable Hardware-Software Co-designMilos Puzovic, Vadim Elisseev, Kirk E. Jordan, James McDonagh, Alexander Harrison, Robert Sawko. supercomputer 2018: 411-417 [doi]

2017

K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of TrinityChang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan. bmcbi, 18(1):467, 2017. [doi]

2016

BSMBench: A flexible and scalable HPC benchmark from beyond the standard model physicsEd Bennett, Biagio Lucini, Luigi Del Debbio, Kirk E. Jordan, Agostino Patella, Claudio Pica, Antonio Rago. ieeehpcs 2016: 834-839 [doi]

2014

Exploring HPC-based scientific software as a service using CometCloudMoustafa AbdelBaky, Javier Diaz Montes, Michael Johnston, Vipin Sachdeva, Richard L. Anderson, Kirk E. Jordan, Manish Parashar. colcom 2014: 35-44 [doi]

Topological Integrity for Dynamic Spline Models During Visualization of Big DataHugh P. Cassidy, Thomas J. Peters, Horea Ilies, Kirk E. Jordan. In Peer-Timo Bremer, Ingrid Hotz, Valerio Pascucci, Ronald Peikert, editors, Topological Methods in Data Analysis and Visualization III, Theory, Algorithms, and Applications. pages 167-183, Springer, 2014. [doi]

Algebraic Multigrid on a Dragonfly Network: First Experiences on a Cray XC30Hormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang. sc 2015: 3-23 [doi]

Isotopic equivalence by Bézier curve subdivision for application to high performance computingKirk E. Jordan, J. Li, Thomas J. Peters, John A. Roulier. cagd, 31(9):642-655, 2014. [doi]

K-mer clustering algorithm using a MapReduce approachChang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan. bibm 2014: 7-9 [doi]

Parallelization of the Trinity Pipeline for De Novo Transcriptome AssemblyVipin Sachdeva, C. S. Kim, Kirk E. Jordan, M. D. Winn. ipps 2014: 566-575 [doi]

2013

Determination of performance characteristics of scientific applications on IBM Blue Gene/QConstantinos Evangelinos, Robert Walkup, Vipin Sachdeva, Kirk E. Jordan, Hormozd Gahvari, I-Hsin Chung, Michael P. Perrone, Ligang Lu, Lurng-Kuo Liu, Karen A. Magerlein. ibmrd, 57(1/2):9, 2013. [doi]

Systematic Reduction of Data Movement in Algebraic Multigrid SolversHormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang. ipps 2013: 1675-1682 [doi]

2012

Enabling High-Performance Computing as a ServiceMoustafa AbdelBaky, Manish Parashar, Hyunjoo Kim, Kirk E. Jordan, Vipin Sachdeva, James Sexton, Hani Jamjoom, Zon-Yin Shae, Gergina Pencheva, Reza Tavakoli, Mary F. Wheeler. Computer, 45(10):72-80, 2012. [doi]

Dynamic Computational Topology for Piecewise Linear CurvesHugh P. Cassidy, Thomas J. Peters, Kirk E. Jordan. cccg 2012: 265-270 [doi]

Modeling the Performance of an Algebraic Multigrid Cycle Using Hybrid MPI/OpenMPHormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang. icpp 2012: 128-137 [doi]

Performance Modeling of Algebraic Multigrid on Blue Gene/Q: Lessons LearnedHormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang. sc 2012: 377-385 [doi]

Coupling a Basin Modeling and a Seismic Code using MOABMi Yan, Kirk E. Jordan, Dinesh K. Kaushik, Michael Perrone, Vipin Sachdeva, Timothy J. Tautges, John Magerlein. iccs 2012: 986-993 [doi]

2011

Modeling the performance of an algebraic multigrid cycle on HPC platformsHormozd Gahvari, Allison H. Baker, Martin Schulz, Ulrike Meier Yang, Kirk E. Jordan, William Gropp. ics 2011: 172-181 [doi]

Geometric Topology & Visualizing 1-ManifoldsKirk E. Jordan, Lance Edward Miller, Thomas J. Peters, Alexander C. Russell. In Valerio Pascucci, Xavier Tricoche, Hans Hagen, Julien Tierny, editors, Topological Methods in Data Analysis and Visualization. Mathematics and Visualization, pages 1-12, Springer, 2011. [doi]

Special Section: 2010 Copper Mountain ConferenceRay Tuminaro, Michele Benzi, Xiao-Chuan Cai, Iain Duff, Howard C. Elman, Roland Freund, Kirk E. Jordan, Tim Kelley, David E. Keyes, Misha Kilmer, Sven Leyffer, Tom Manteuffel, Steve McCormick, David J. Silvester, Homer F. Walker. siamsc, 33(5):2685, 2011. [doi]

Undergraduate Computational Science and Engineering EducationPeter R. Turner, Linda Petzold, Angela B. Shiflet, Ignatios Vakalis, Kirk E. Jordan, Samuel St. John. siamrev, 53(3):561-574, 2011. [doi]

2010

A service composition framework for market-oriented high performance computing cloudTran Vu Pham, Hani Jamjoom, Kirk E. Jordan, Zon-Yin Shae. hpdc 2010: 284-287 [doi]

2008

Uncertainty quantification-as-a-serviceMalgorzata Zimon, Vadim Elisseev, Robert Sawko, Samuel Antão, Kirk E. Jordan. cascon 2018: 331-337 [doi]

2007

Scaling Science Applications on Blue GeneWilliam D. Gropp, Wolfgang Frings, Marc-André Hermanns, Ed Jedlicka, Kirk E. Jordan, Fred Mintzer, Boris Orth. parco 2008: 583-584

2006

PrefaceSteve Burbeck, Kirk E. Jordan. ibmrd, 50(6):527-528, 2006. [doi]

An assessment of the role of computing in systems biologySteve Burbeck, Kirk E. Jordan. ibmrd, 50(6):529-544, 2006. [doi]

2004

Singular operators in multiwavelet basesGeorge I. Fann, Gregory Beylkin, Robert J. Harrison, Kirk E. Jordan. ibmrd, 48(2):161-172, 2004. [doi]

PrefaceKirk E. Jordan. ibmrd, 48(2):151-152, 2004. [doi]

1998

Using PVM and MPI for Co-processed, Distributed and Parallel Scientific VisualizationRobert Haimes, Kirk E. Jordan. ipps 1998: 1098-1105

1996

Distributed visualization of 3D thermal convection in the geological sciencesKirk E. Jordan, David A. Yuen, David M. Reuteler, Shuxia Zhang. pcfd 1997: 243-250 [doi]

1993

UTCHEM: A Chemical Flood Simulator on the CM5Adam Greenberg, Marcelo Rame, Kirk E. Jordan, Mary Wheeler. ppsc 1993: 1011-1014

1992

Simulation of Particle Mixing by Turbulent Convective Flows on the Connection MachineAndrei V. Malevsky, David A. Yuen, Kirk E. Jordan. sc 1992: 294-300

1988

The Good, The Bad, and The Ugly: Comparing High Speed Computer SystemsKirk E. Jordan. compcon 1988: 90-96

1987

Performance Comparison of Large-Scale Scientific Computers: Scalar Mainframes, Mainframes with Integrated Vector Facilities, and SupercomputersKirk E. Jordan. Computer, 20(3):10-23, 1987.

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