Abstract is missing.
- SNPing in the human genomeDeborah Nickerson. 1 [doi]
- Maximum likelihood resolution of multi-block genotypesGad Kimmel, Ron Shamir. 2-9 [doi]
- Perfect phylogeny and haplotype assignmentEran Halperin, Richard M. Karp. 10-19 [doi]
- An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programmingJing Li 0002, Tao Jiang. 20-29 [doi]
- Chromosomal breakpoint re-use in the inference of genome sequence rearrangementDavid Sankoff, Phil Trinh. 30-35 [doi]
- Learning multiple evolutionary pathways from cross-sectional dataNiko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer. 36-44 [doi]
- Algorithms for inferring cis-regulatory structures and protein interaction networksRichard M. Karp. 45 [doi]
- A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzymeRyan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald. 46-57 [doi]
- A random graph approach to NMR sequential assignmentChris Bailey-Kellogg, Sheetal Chainraj, Gopal Pandurangan. 58-67 [doi]
- Finding short DNA motifs using permuted markov modelsXiaoyue Zhao, Haiyan Huang, Terence P. Speed. 68-75 [doi]
- Designing multiple simultaneous seeds for DNA similarity searchYanni Sun, Jeremy Buhler. 76-84 [doi]
- Aligning alignments exactlyJohn D. Kececioglu, Dean Starrett. 85-96 [doi]
- Systems biology and malariaElizabeth A. Winzeler, Karine G. Le Roch, Yingyao Zhou, Peter L. Blair, Muni Grainger, J. Kathleen Moch, J. David Haynes, Patricia De la Vega, Anthony A. Holder, Serge Batalov, Daniel J. Carucci. 97 [doi]
- Stochastic models inspired by hybridization theory for short oligonucleotide arraysZhijin Wu, Rafael A. Irizarry. 98-106 [doi]
- Checking homogeneity of motifs distribution in heterogenous sequencesSabrina Ledent, Stéphane Robin. 107-114 [doi]
- From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profilesEleazar Eskin. 115-124 [doi]
- Finding motifs for insufficient number of sequences with strong binding to transcription factoFrancis Y. L. Chin, Henry C. M. Leung, Siu-Ming Yiu, Tak Wah Lam, Roni Rosenfeld, Wai Wan Tsang, David K. Smith, Y. Jiang. 125-132 [doi]
- Structured motifs searchAlberto Policriti, Nicola Vitacolonna, Michele Morgante, Andrea Zuccolo. 133-139 [doi]
- Evolutionary change in developmental genetic networksWilliam McGinnis. 140 [doi]
- A discriminative model for identifying spatial cis-regulatory modulesEran Segal, Roded Sharan. 141-149 [doi]
- Discovering temporal relations in molecular pathways using protein-protein interactionsMartin Farach-Colton, Yang Huang, John L. L. Woolford. 150-156 [doi]
- Comparing ::::in situ m::::RNA expression patterns of ::::drosophila:::: embryosHanchuan Peng, Eugene W. Myers. 157-166 [doi]
- Probabilistic discovery of overlapping cellular processes and their regulationAlexis Battle, Eran Segal, Daphne Koller. 167-176 [doi]
- Computational identification of evolutionarily conserved exonsAdam C. Siepel, David Haussler. 177-186 [doi]
- Multiple organism gene finding by collapsed gibbs samplingSourav Chatterji, Lior Pachter. 187-193 [doi]
- Somatic evolution of cancerMartin Nowak. 194 [doi]
- Protein similarity from knot theory and geometric convolutionMichael Erdmann. 195-204 [doi]
- Interface surfaces for protein-protein complexesYih-En Andrew Ban, Herbert Edelsbrunner, Johannes Rudolph. 205-212 [doi]
- ::::De novo:::: repeat classification and fragment assemblyPavel A. Pevzner, Haixu Tang, Glenn Tesler. 213-222 [doi]
- Finding approximate tandem repeats in genomic sequencesYdo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Geiger. 223-232 [doi]
- Finding anchors for genomic sequence comparisonRoss Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail. 233-241 [doi]
- RNAi, genome ultrastructure, and other unexpected tales from the analysis of genetic silencingAndrew Fire. 242 [doi]
- Faster genome annotation of non-coding RNA families without loss of accuracyZasha Weinberg, Walter L. Ruzzo. 243-251 [doi]
- Using motion planning to study RNA folding kineticsXinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato. 252-261 [doi]
- A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAsHaifeng Li, Tao Jiang. 262-271 [doi]
- Identifying conserved gene clusters in the presence of orthologous groupsXin He, Michael H. Goldwasser. 272-280 [doi]
- Fifty years of sequence analysis: what have we learned?Russell F. Doolittle. 281 [doi]
- Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction dataRoded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp. 282-289 [doi]
- The evolutionary capacity of protein structuresLeonid Meyerguz, David Kempe, Jon M. Kleinberg, Ron Elber. 290-297 [doi]
- Wrap-and-pack: a new paradigm for beta structural motif recognition with application to recognizing beta trefoilsMatthew Menke, Eben Scanlon, Jonathan King, Bonnie Berger, Lenore Cowen. 298-307 [doi]
- Mining protein family specific residue packing patterns from protein structure graphsJun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jack Snoeyink, Jan Prins, Alexander Tropsha. 308-315 [doi]
- Reconciliation problems for duplication, loss and horizontal gene transferPawel Górecki. 316-325 [doi]
- Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolutionLars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad. 326-335 [doi]
- A structural perspective on genome evolutionDavid Lee, Alastair Grant, Ian Sillitoe, Mark Dibley, Juan Garcia Ranea, Christine A. Orengo. 336 [doi]
- Reconstructing reticulate evolution in species: theory and practiceLuay Nakhleh, Tandy Warnow, C. Randal Linder. 337-346 [doi]
- Simultaneous identification of duplications and lateral transfersMichael T. Hallett, Jens Lagergren, Ali Tofigh. 347-356 [doi]
- Recent advances on the manipulation of single biomoleculesCarlos Bustamante. 357 [doi]