Liliana Florea - researchr alias

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Viewing Publication 1 - 17 from 17

2021

Jutils: a visualization toolkit for differential alternative splicing eventsGuangyu Yang, Leslie Cope, Zitong He, Liliana Florea. bioinformatics, 37(22):4272-4274, November 2021. [doi]

2018

Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancerBahman Afsari, Theresa Guo, Michael Considine, Liliana Florea, Luciane T. Kagohara, Genevieve L. Stein-O'Brien, Dylan Kelley, Emily Flam, Kristina D. Zambo, Patrick K. Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig. bioinformatics, 34(11):1859-1867, 2018. [doi]

2016

JULiP: An efficient model for accurate intron selection from multiple RNA-seq samplesGuangyu Yang, Liliana Florea. iccabs 2016: 1-6 [doi]

JULiP: An efficient model for accurate intron selection from multiple RNA-seq samplesGuangyu Yang, Liliana Florea. iccabs 2016: 1 [doi]

2013

Genome-Guided Transcriptome Assembly in the Age of Next-Generation SequencingLiliana Florea, Steven L. Salzberg. tcbb, 10(5):1234-1240, 2013. [doi]

Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissuesLiliana Florea, Li Song, Steven L. Salzberg. f1000research, 2:188, 2013. [doi]

CLASS: constrained transcript assembly of RNA-seq readsLi Song, Liliana Florea. bmcbi, 14(S-5), 2013. [doi]

2011

Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexingBrian Walenz, Liliana Florea. bioinformatics, 27(13):1869-1870, 2011. [doi]

2010

Spaced Seeds for Cross-species CDNA-to-genome Sequence AlignmentLiliana Florea, Ingrid Mihai, Leming Zhou. cominfsys, 10(2):115-136, 2010. [doi]

2008

Effective cluster-based seed design for cross-species sequence comparisonsLeming Zhou, Ingrid Mihai, Liliana Florea. bioinformatics, 24(24):2926-2927, 2008. [doi]

Universal seeds for cDNA-to-genome comparisonLeming Zhou, Jonathan Stanton, Liliana Florea. bmcbi, 9, 2008. [doi]

2007

Designing Sensitive and Specific Spaced Seeds for Cross-Species mRNA-to-Genome AlignmentLeming Zhou, Liliana Florea. jcb, 14(2):113-130, 2007. [doi]

2006

Bioinformatics of alternative splicing and its regulationLiliana Florea. bib, 7(1):55-69, 2006. [doi]

2005

Finding Anchors for Genomic Sequence ComparisonRoss A. Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail. jcb, 12(6):762-776, 2005. [doi]

2004

Finding anchors for genomic sequence comparisonRoss Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail. recomb 2004: 233-241 [doi]

2003

EnteriX 2003: visualization tools for genome alignments of EnterobacteriaceaeLiliana Florea, Michael McClelland, Cathy Riemer, Scott Schwartz, Webb Miller. nar, 31(13):3527-3532, 2003.

Epitope Prediction Algorithms for Peptide based Vaccine DesignLiliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail. csb 2003: 17-26 [doi]

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