Abstract is missing.
- Stepping Up the Pace of Discovery: the Genomes to Life ProgramMarvin Frazier, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Edward C. Uberbacher. 2-9 [doi]
- The Role of Algorithmic Research in Computational GenomicsRichard M. Karp. 10-12 [doi]
- High Performance Computational Biology - Past Progress and Future PromisePhilip E. Bourne. 13 [doi]
- Bridging Paradigm Gaps Between Biology and EngineeringJehoshua Bruck. 14 [doi]
- Microbial Functional Genomics: Pulling Together a Variety of Approaches and ConceptsJean-Michel Claverie. 15 [doi]
- The Sea Urchin Endomesoderm Gene Regulatory Network, an Encoded Logic Map for Early DevelopmentEric H. Davidson. 16 [doi]
- Epitope Prediction Algorithms for Peptide based Vaccine DesignLiliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail. 17-26 [doi]
- Pathway BioinformaticsPeter D. Karp. 27 [doi]
- BPPS: An Algorithm for Analyzing Protein Sequence AlignmentsJun Liu. 28 [doi]
- Eulerian Path Methods for Multiple Sequence AlignmentMichael S. Waterman, Yu Zhang. 29 [doi]
- Integrating Bioinformatics Advances into Disease Management Systems to Improve Quality of CareStephen Wong. 30 [doi]
- Computing for the DOE Genomes to Life ProgramEdward C. Uberbacher, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Marvin Frazier. 32 [doi]
- Motifs and Modules in Cellular Signal Processing: Applications to Microbial Stress Response PathwaysAdam P. Arkin. 33 [doi]
- An Overview of the Sandia National Laboratories Genomes to Life Project, Carbon Sequestration in Synechococcus Sp.: From Molecular Machines to Hierarchical Modeling Grant Heffelfinger. 34 [doi]
- Analysis of the Genetic Potential and Gene Expression of Microbial Communities Involved in the In Situ Bioremediation of Uranium and Harvesting ElectricalEnergy from Organic MatterDerek Lovley. 35-37 [doi]
- Clustering Binary Fingerprint Vectors with Missing Values for DNA Array Data AnalysisAndres Figueroa, James Borneman, Tao Jiang. 38-47 [doi]
- Clustering Time-Varying Gene Expression Profiles using Scale-space SignalsTanveer Fathima Syeda-Mahmood. 48-56 [doi]
- Fast and Sensitive Probe Selection for DNA Chips Using Jumps in Matching StatisticsSven Rahmann. 57-64 [doi]
- Fast and Accurate Probe Selection Algorithm for Large GenomesWing-Kin Sung, Wah-Heng Lee. 65-74 [doi]
- Degenerate Primer Design via ClusteringXintao Wei, David N. Kuhn, Giri Narasimhan. 75-83 [doi]
- Group Testing With DNA Chips: Generating Designs and Decoding ExperimentsAlexander Schliep, David C. Torney, Sven Rahmann. 84-93 [doi]
- Can We Identify Cellular Pathways Implicated in Cancer Using Gene Expression Data?Nigam Shah, Jorge Lepre, Yuhai Tu, Gustavo Stolovitzky. 94-103 [doi]
- Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian NetworksSeiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano. 104-113 [doi]
- Two operative concepts for the post-genomic era: the me moire vive of the cell and a molecular algebraSimone Bentolila. 114-123 [doi]
- Stochastic Stage-structured Modeling of the Adaptive Immune SystemDennis L. Chao, Miles P. Davenport, Stephanie Forrest, Alan S. Perelson. 124-131 [doi]
- A Personalized and Automated dbSNP Surveillance SystemShuo Liu, Steve Lin, Mark Woon, Teri E. Klein, Russ B. Altman. 132-136 [doi]
- Fourier Harmonic Approach for Visualizing Temporal Patterns of Gene Expression DataLi Zhang, Aidong Zhang, Murali Ramanathan. 137-147 [doi]
- Towards Index-based Similarity Search for Protein Structure DatabasesOrhan Çamoglu, Tamer Kahveci, Ambuj K. Singh. 148-158 [doi]
- Local Similarity in RNA Secondary StructuresMatthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz. 159-168 [doi]
- CTSS: A Robust and Efficient Method for Protein Structure Alignment Based on Local Geometrical and Biological FeatureTolga Can, Yuan-Fang Wang. 169-179 [doi]
- Statistical and Visual Morph Movie Analysis of Crystallographic Mutant Selection Bias in Protein Mutation Resource DataWerner G. Krebs, Philip E. Bourne. 180-189 [doi]
- Statistical Inference for Well-ordered Structures in Nucleotide SequencesShu-Yun Le, Jih-H. Chen, Jacob V. Maizel. 190-196 [doi]
- Automated Protein NMR Resonance AssignmentsXiang Wan, Dong Xu, Carolyn M. Slupsky, Guohui Lin. 197-208 [doi]
- 3D Structural Homology Detection via Unassigned Residual Dipolar CouplingsChristopher James Langmead, Bruce Randall Donald. 209-219 [doi]
- Discovering Compact and Highly Discriminative Features or Feature Combinations of Drug Activities Using Support Vector MachinesHwanjo Yu, Jiong Yang, Wei Wang 0010, Jiawei Han. 220-228 [doi]
- Initial Large-scale Exploration of Protein-protein Interactions in Human BrainJake Yue Chen, Andrey Y. Sivachenko, Russell Bell, Cornelia Kurschner, Irene Ota, Sudhir Sahasrabudhe. 229-234 [doi]
- An SVM-based Algorithm for Identification of Photosynthesis-specific Genome FeaturesGong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F. Samatova. 235-243 [doi]
- Experimental Studies of the Universal Chemical Key (UCK)Algorithm on the NCI Database of Chemical CompoundsRobert L. Grossman, Pavan Kasturi, Donald Hamelberg, Bing Liu. 244-250 [doi]
- A Probabilistic Model for Identifying Protein Names and their Name BoundariesKazuhiro Seki, Javed Mostafa. 251-259 [doi]
- cWINNOWER Algorithm for Finding Fuzzy DNA MotifsShoudan Liang. 260-265 [doi]
- LOGOS: a modular Bayesian model for de novo motif detectionEric P. Xing, Wei Wu, Michael I. Jordan, Richard M. Karp. 266-276 [doi]
- SMASHing regulatory sites in DNA by humanMihaela Zavolan, Nicholas D. Socci, Nikolaus Rajewsky, Terry Gaasterland. 277-287 [doi]
- A Block Coding Method that Leads to Significantly Lower Entropy Values for the Proteins and Coding Sections of Haemophilus influenzaeG. Sampath. 287-293 [doi]
- A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression VectorsRavi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga. 294-305 [doi]
- Haplotype Motifs: An Algorithmic Approach to Locating Evolutionarily Conserved Patterns in Haploid SequencesRussell Schwartz. 306-315 [doi]
- Computing Highly Specific and Mismatch Tolerant Oligomers EfficientlyTomoyuki Yamada, Shinichi Morishita. 316-325 [doi]
- ANTICLUSTAL: Multiple Sequence Alignment by Antipole Clustering and Linear Approximate 1-Median ComputationCinzia Di Pietro, V. Di Pietro, G. Emmanuele, Alfredo Ferro, T. Maugeri, E. Modica, Giuseppe Pigola, Alfredo Pulvirenti, Michele Purrello, Marco Ragusa, M. Scalia, Dennis Shasha, S. Travali, V. Zimmitti. 326-336 [doi]
- Efficient Constrained Multiple Sequence Alignment with Performance GuaranteeFrancis Y. L. Chin, N. L. Ho, Tak Wah Lam, Prudence W. H. Wong, Mee Yee Chan. 337-346 [doi]
- A New Similarity Measure among Protein SequencesKuen-Pin Wu, Hsin-Nan Lin, Ting-Yi Sung, Wen-Lian Hsu. 347-352 [doi]
- A New Approach for Gene Annotation Using Unambiguous Sequence JoiningAlexandre Tchourbanov, Daniel Quest, Hesham H. Ali, Mark Pauley, Robert Norgren. 353-362 [doi]
- Efficient Reconstruction of Phylogenetic Networks with Constrained RecombinationDan Gusfield, Satish Eddhu, Charles H. Langley. 363-374 [doi]
- Prokaryote Phylogeny without Sequence Alignment: From Avoidance Signature to Composition DistanceBailin Hao, Ji Qi. 375-385 [doi]
- A Semantic Mediation Approach for Problems in Computational Molecular BiologyMonica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta. 386-387 [doi]
- A Query Language to Support Scientific DiscoveryBarbara A. Eckman, Kerry Deutsch, Marta Janer, Zoé Lacroix, Louiqa Raschid. 388-391 [doi]
- Application of Singular Value Decomposition and Functional Clustering to Analyzing Gene Expression Profiles of Renal Cell CarcinomaZhong-Hui Duan, Louis S. Liou, Ting Shi, Joseph A. DiDonato. 392-393 [doi]
- Statistical Resynchronization and Detection of Periodic TranscriptsXin Lu, Wen Zhang, Zhaohui S. Qin, Jun S. Liu. 394-395 [doi]
- A Method for Tight Clustering: with Application to MicroarrayGeorge C. Tseng, Wing Hung Wong. 396-397 [doi]
- Riptide: Fast Protein Identification from Mass Spectrometer DataRichard J. Carter. 398-399 [doi]
- Accelerating the Drug Design Process through Parallel Inductive Logic Programming Data MiningJames H. Graham, C. David Page Jr., Ahmed H. Kamal. 400-402 [doi]
- Estimating Recombination Rate Distribution by Optimal QuantizationMingzhou Song, Stephane Boissinot, Robert M. Haralick, Ihsin T. Phillips. 403-406 [doi]
- Statistical issues in the analysis of the array CGH dataJane Fridlyand, Antoine Snijders, Dan Pinkel, Donna Albertson, Ajay N. Jain. 407-408 [doi]
- Identification of Contaminants in Proteomics Mass Spectrometry DataM. Duncan, K. Fung, H. Wang, C. Yen, K. Cios. 409-410 [doi]
- A Flexible Pipeline for Experimental Design, Processing, and Analysis of Microarray DataStephen Osborn, Scot Kennedy, Daniel Chin. 411-412 [doi]
- A Computational Approach to Reconstructing Gene Regulatory NetworksXutao Deng, Hesham H. Ali. 413-414 [doi]
- Probability Profiles - Novel Approach in Tandem Mass Spectrometry De Novo SequencingTema Fridman, Robert M. Day, Jane Razumovsbya, Dong Xu, Andrey Gorin. 415-418 [doi]
- A Symbolic Logic Strategy For Mapping Biological Concepts in the HERBE PrototypeEric G. Stephan, George Chin Jr., Kyle R. Klicker, Abigail L. Corrigan, Heidi J. Sofia. 419-420 [doi]
- A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUESTJane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu. 421-423 [doi]
- Tomato Expression Database (TED) - An Interactive Management Tool for Tomato Expression Profiling DataZhangjun Fei, Xuemei Tang, Rob Alba, Paxton Payton, James Giovannoni. 424-425 [doi]
- Oncogenetics Tree Models - An EstimationHarpreet Kaur Gill. 426 [doi]
- The GeneCardsTM Family of Databases: GeneCards, GeneLoc, GeneNote and GeneAnnotMarilyn Safran, Vered Chalifa-Caspi, Orit Shmueli, Naomi Rosen, Hila Benjamin-Rodrig, Ron Ophir, Itai Yanai, Michael Shmoish, Doron Lancet. 427-428 [doi]
- Wavelet Transforms for the Analysis of Microarray ExperimentsTaku A. Tokuyasu, Donna Albertson, Dan Pinkel, Ajay N. Jain. 429-430 [doi]
- MageBuilder: A Schema Translation Tool for Generating MAGE-ML from Tabular Microarray DataBill Martin, Robert M. Horton. 431-432 [doi]
- OptiRNai, a Web-based Program to Select siRNA SequencesWenwu Cui, Jianchang Ning, Ulhas P. Naik, Melinda K. Duncan. 433-434 [doi]
- A rule-based framework for gene regulation pathways discoveryBartosz Wilczynski, Torgeir R. Hvidsten, Andriy Kryshtafovych, Lisa Stubbs, Henryk Jan Komorowski, Krzysztof Fidelis. 435-436 [doi]
- Gene Function, Metabolic Pathways and Comparative Genomics in YeastQing Dong, Rama Balakrishnan, Gail Binkley, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Robert S. Nash, Laurie Issel-Tarver, Anand Sethuraman, Chandra L. Theesfeld, Shuai Weng, David Botstein, J. Michael Cherry. 437-438 [doi]
- Using Rule Induction Methods to Analyze Gene Expression DataGary Livingston, Xiao Li, Guangyi Li, Liwu Hao, Jiangping Zhou. 439-441 [doi]
- Computational prediction of DtxR regulon-A Dissection of physiological process controlled by DtxR in Corynebacterium speciesSailu Yellaboina, Prachee Chakhaiyar, Seyed Ehetsham Hasnain, Akash Ranjan. 442-443 [doi]
- A New Approach to Gene Prediction Using the Self-Organizing MapShaun Mahony, Terry J. Smith, James O. McInerney, Aaron Golden. 444-445 [doi]
- On Gene Prediction by Cross-Species Comparative Sequence AnalysisRong Chen, Hesham H. Ali. 446-447 [doi]
- CUBIC: Identification of Regulatory Binding Sites Through Data ClusteringVictor Olman, Dong Xu, Ying Xu. 448-449 [doi]
- SNP Analysis System for Detecting Complex Disease Associated SitesYoko Higashi, Hirotaka Higuchi, Takashi Kido, Hirohito Matsumine, Masanori Baba, Toshihiko Morimoto, Masaaki Muramatsu. 450-451 [doi]
- Haplotype Pattern Mining & Classification for detecting disease associated SiteTakashi Kido, Masanori Baba, Hirohito Matsumine, Yoko Higashi, Hirotaka Higuchi, Masaaki Muramatsu. 452-455 [doi]
- What makes IgG binding domain of protein L fold up to native state: a simulation study with physical oriented energy functions coupled to topology induced termsSeung Yup Lee, Yoshimi Fujitsuka, Shoji Takada, Do Hyun Kim. 456-457 [doi]
- New Computational Methods for Electrostatics in Macromolecular SimulationIgor Tsukerman. 458-459 [doi]
- The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor EnergeticsChengpeng Bi, Craig J. Benham. 460-461 [doi]
- Substrate Recognition by Enzymes: a Theoretical StudyKaori Ueno-Noto, Keiko Takano, Miki Hara-Yokoyama. 462-463 [doi]
- Computational Simulation of Lipid Bilayer Reorientation at GapsPeter M. Kasson, Vijay S. Pande. 464-467 [doi]
- Search for Evolution-Related-Oligonucleotides and Conservative Words in rRNA SequencesLiaofu Luo, Li-Ching Hsieh, Fengmin Ji, Mengwen Jia, H. C. Lee. 468-469 [doi]
- High Speed GAML-based Phylogenetic Tree Reconstruction Using HW/SW CodesignTerrence S. T. Mak, K. P. Lam. 470-473 [doi]
- Evidence for Growth of Microbial Genomes by Short Segmental DuplicationsLi-Ching Hsieh, Liaofu Luo, H. C. Lee. 474-475 [doi]
- PTC: An Interactive Tool for Phylogenetic Tree ConstructionChen Yang, Sami Khuri. 476-477 [doi]
- Iterative Rank based Methods for ClusteringSören W. Perrey, Heinrich Brinck, Achim Zielesny. 478-479 [doi]
- Analysis of Phylogenetic Profiles Using Bayesian DecompositionGhislain Bidaut, Karsten Suhre, Jean-Michel Claverie, Michael F. Ochs. 480-481 [doi]
- Automatic Recognition of Regions of Intrinsically Poor Multiple Alignment Using Machine LearningYunfeng Shan, Evangelos E. Milios, Andrew J. Roger, Christian Blouin, Edward Susko. 482-483 [doi]
- Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene LossJun Huan, Jan Prins, Wei Wang 0010, Todd J. Vision. 484-485 [doi]
- Reconstruction of Ancient Operons From Complete Microbial Genome SequencesYuhong Wang, John P. Rose, Bi-Cheng Wang, Dawei Lin. 486-487 [doi]
- An Evolutionary Approach to Finding Schemas for 3-Class Protein Secondary Structure PredictionHsiang Chi Huang. 488-491 [doi]
- Gene Selection for Multi-Class Prediction of Microarray DataDechang Chen, Dong Hua, Jaques Reifman, Xiuzhen Cheng. 492-495 [doi]
- Latent Structure Models for the Analysis of Gene Expression DataDong Hua, Dechang Chen, Xiuzhen Cheng, Abdou Youssef. 496-499 [doi]
- Molecular Evaluation using Comparative Molecular Interaction Profile Analysis systemYoshiharu Hayashi, Katsuyoshi Sakaguchi, Nao Iwata, Masaki Kobayashi. 500-501 [doi]
- Probe Design for Large-Scale Molecular Biology ApplicationsVincent Van Buren, Toshiyuki Yoshikawa, Toshio Hamatani, Minoru S. H. Ko. 502-503 [doi]
- Gene Selection for Cancer Classification Using Bootstrapped Genetic Algorithms and Support Vector MachinesXue-wen Chen. 504-505 [doi]
- A Statistical Model of Proteolytic DigestionI-Jeng Wang, Christopher P. Diehl, Fernando J. Pineda. 506-508 [doi]
- Preliminary Wavelet Analysis of Genomic SequencesJianchang Ning, Charles N. Moore, J. Clare Nelson. 509-510 [doi]
- Using Easel for Modeling and Simulating the Interactions of Cells in Order to Better Understand the Basics of Biological Processes and to Predict Their Likely BehaviorsVojislav Stojkovic, Grace Steele, William Lupton. 511-516 [doi]
- Fold Recognition Using Sequence Fingerprints of Protein Local SubstructuresAndriy Kryshtafovych, Torgeir R. Hvidsten, Henryk Jan Komorowski, Krzysztof Fidelis. 517-518 [doi]
- An Iterative Loop Matching Approach to the Prediction of RNA Secondary StruJianhua Ruan, Gary D. Stormo, Weixiong Zhang. 519-520 [doi]
- A New Method for Predicting RNA Secondary StructureHirotoshi Taira, Tomonori Izumitani, Eisaku Maeda, Takeshi Suzuki. 521-522 [doi]
- Minimum Redundancy Feature Selection from Microarray Gene Expression DataChris H. Q. Ding, Hanchuan Peng. 523-529 [doi]
- Automatic Parameter Selection for Sequence Similarity SearchJianping Zhou, Gary Livingston, Georges G. Grinstein. 530-531 [doi]
- A Linear Programming Based Algorithm for Multiple Sequence AlignmentsFern Y. Hunt, Anthony J. Kearsley, Agnes O Gallagher. 532-533 [doi]
- Alignment-Free Sequence Comparison with Vector Quantization and Hidden Markov ModelsTuan D. Pham. 534-535 [doi]
- Prediction of Protein Function Using Signal Processing of Biochemical PropertiesKrishna Gopalakrishnan, Kayvan Najarian. 536-538 [doi]
- Genomic Sequence Analysis Using Gap Sequences and Pattern FilteringShih-Chieh Su, Chia H. Yeh, C. C. Jay Kuo. 539-540 [doi]
- An Optimal DNA Segmentation Based on the MDL PrincipleWojciech Szpankowski, Wenhui Ren, Lukasz Szpankowski. 541-546 [doi]
- The Cybertory Sequence File System for Managing Large DNA SequencesCarl E. McMillin, Robert M. Horton. 547-548 [doi]
- Implementing Parallel Hmm-pfam on the EARTH Multithreaded ArchitectureWeirong Zhu, Yanwei Niu, Jizhu Lu, Guang R. Gao. 549-550 [doi]
- Genome on Demand: Interactive Substring SearchingTamer Kahveci, Ambuj K. Singh. 551-552 [doi]
- CoMRI: A Compressed Multi-Resolution Index Structure for Sequence Similarity QueriesHong Sun, Ozgur Ozturk, Hakan Ferhatosmanoglu. 553-559 [doi]
- Genetic Algorithm Approach for the Closest String ProblemHolger Mauch, Michael J. Melzer, John S. Hu. 560-561 [doi]
- GenericBioMatch: A novel generic pattern match algorithm for biological sequencesYoulian Pan, Fazel Famili. 562-563 [doi]
- Aligning ESTs to Genome Using Multi-Layer Unique MakersFang-Rong Hsu, J. F. Chen. 564-566 [doi]
- A Parallel Genetic Algorithm for Physical Mapping of ChromosomesSuchendra M. Bhandarkar, Jinling Huang, Jonathan Arnold. 567-572 [doi]
- RCIS: A Common Interval Searching Algorithm for Amino Acid SequencesXiaolu Huang, Hesham H. Ali. 573-574 [doi]
- Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray ExperimentsMehmet Koyutürk, Ananth Grama, Wojciech Szpankowski. 575-580 [doi]
- Exact and Heuristic Algorithms for the DNA Fragment Assembly ProblemYimin Jing, Sami Khuri. 581-582 [doi]
- Finding Higher Order Motifs under the Levenshtein MeasureEzekiel F. Adebiyi, Tinuke Dipe. 583-584 [doi]
- Mapping Discontinuous Antibody Epitopes to Reveal Protein Structure and Changes in Structure Related to FunctionBrendan Mumey, Thomas Angel, Bonnie Kirkpatrick, Brian W. Bailey, P. Hargrave, Algirdas J. Jesaitis, Edward A. Dratz. 585-586 [doi]
- The SCP and Compressed Domain Analysis of Biological SequencesDonald A. Adjeroh, Jianan Feng. 587-592 [doi]
- Identifying Regulatory Signals in DNA-Sequences with a Non-statistical Approximation ApproachCun-Quan Zhang, Yunkai Liu, Elaine M. Eschen, Keqiang Wu. 593-597 [doi]
- A Genetic Algorithm for Simplifying The Amino Acid AlphabetMatthew Palensky, Hesham H. Ali. 598-601 [doi]
- Spectral Decomposition of the Laplacian Matrix Applied to RNA Folding PredictionDanny Barash. 602-603 [doi]
- Identification of Non-Random Patterns in Structural and Mutational Data: the Case of Prion ProteinIgor B. Kuznetsov, Shelly Rackovsky. 604-608 [doi]
- Multiple Protein Structure Alignment by Deterministic AnnealingLuonan Chen. 609-610 [doi]
- An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar CouplingsLincong Wang, Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald. 611-612 [doi]
- Automatic Construction of 3D Structural Motifs for Protein Function PredictionMike P. Liang, Douglas L. Brutlag, Russ B. Altman. 613-614 [doi]
- Local Minima-Based Exploration for Off-Lattice Protein FoldingEugene Santos Jr., Keum Joo Kim, Eunice E. Santos. 615-617 [doi]
- Pathway Logic Modeling of Protein Functional Domains in Signal TransductionCarolyn L. Talcott, Steven Eker, Merrill Knapp, Patrick Lincoln, Keith Laderoute. 618-619 [doi]
- Development of a Massively-Parallel, Biological Circuit SimulatorRichard L. Schiek, Elebeoba E. May. 620-622 [doi]
- Representing and reasoning about signal networks: an illustration using NF/kappaB dependent signaling pathwaysChitta Baral, Karen Chancellor, Nam Tran, Nhan Tran. 623-628 [doi]
- Noise-Attenuation in Artificial Genetic NetworksYoshihiro Morishita, Kazuyuki Aihara. 629-630 [doi]
- Computational Inference of Regulatory Pathways in MicrobesZhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, B. Palenik, Ying Xu. 631-633 [doi]
- A Contradiction-Based Framework for Testing Gene Regulation HypothesesSteve Racunas, Nigam Shah, Nina V. Fedoroff. 634-638 [doi]
- Identifying Gene and Protein Names from Biological TextsWeijian Xuan, Stanley J. Watson, Huda Akil, Fan Meng. 639-643 [doi]
- Refining the Extraction of Relevant Documents from Biomedical Literature to Create a Corpus for Pathway Text MiningRachel Harte, Yan Lu, Stephen Osborn, David Dehoney, Daniel Chin. 644-645 [doi]
- Using Natural Language Processing and the Gene Ontology to Populate a Structured Pathway DatabaseDavid Dehoney, Rachel Harte, Yan Lu, Daniel Chin. 646-647 [doi]
- Text Pattern Visualization for analysis of biology full text and captionsAndrea Elaina Grimes, Robert P. Futrelle. 648-653 [doi]
- Development and Assessment of Bioinformatics Tools for Species Conservation and Habitat ManagementMelanie A. Sutton, Lori Deneke, John Eme, Wayne Bennett, Frank Wray. 654-655 [doi]
- MedfoLink: Bridging the Gap between IT and the Medical CommunityJoseph Gerrein, Armen Kherlopian, Vezen Wu, Mitchell Berman, Alvin Wald. 656-657 [doi]
- TC-DB: An Architecture for Membrane Transport Protein AnalysisCan V. Tran, Nelson M. Yang, Milton H. Saier Jr.. 658-660 [doi]