Craig J. Benham - researchr alias

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Viewing Publication 1 - 23 from 23

2015

SIST: stress-induced structural transitions in superhelical DNADina Zhabinskaya, Sally Madden, Craig J. Benham. bioinformatics, 31(3):421-422, 2015. [doi]

2012

Theoretical Analysis of Competing Conformational Transitions in Superhelical DNADina Zhabinskaya, Craig J. Benham. ploscb, 8(4), 2012. [doi]

2011

Theoretical Analysis of the Stress Induced B-Z Transition in Superhelical DNADina Zhabinskaya, Craig J. Benham. ploscb, 7(1), 2011. [doi]

2008

Superhelical Destabilization in Regulatory Regions of Stress Response GenesHuiquan Wang, Craig J. Benham. ploscb, 4(1), 2008. [doi]

2007

OriDB: a DNA replication origin databaseConrad A. Nieduszynski, Shin-ichiro Hiraga, Prashanth Ak, Craig J. Benham, Anne D. Donaldson. nar, 35(Database-Issue):40-46, 2007. [doi]

2006

SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomesHuiquan Wang, Miroslava Kaloper, Craig J. Benham. nar, 34(Database-Issue):373-378, 2006. [doi]

Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stressHuiquan Wang, Craig J. Benham. bmcbi, 7:248, 2006. [doi]

2005

Susceptibility to Superhelically Driven DNA Duplex Destabilization: A Highly Conserved Property of Yeast Replication OriginsPrashanth Ak, Craig J. Benham. ploscb, 1(1), 2005. [doi]

Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence PropertiesHuiquan Wang, Craig J. Benham. recomb 2006: 212-224 [doi]

2004

The Analysis of Stress-Induced Duplex Destabilization in Long Genomic DNA SequencesCraig J. Benham, Chengpeng Bi. jcb, 11(4):519-543, 2004. [doi]

Superhelically Destabilized Sites in the E. coli Genome: Implications for Promoter Prediction in ProkaryotesHuiquan Wang, Craig J. Benham. gcb 2004: 217-226

2003

The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor EnergeticsChengpeng Bi, Craig J. Benham. csb 2003: 460-461 [doi]

2001

1998

The topologically driven strand separation transition in DNA---methods of analysis and biological significanceCraig J. Benham. dimacs 1999: 173-198

A formally exact method to numerically analyze local denaturation in superhelical DNARichard M. Fye, Craig J. Benham. recomb 1998: 79-84 [doi]

1997

DNA Strand Separation Prediction: A Parallel ImplementationGabriela Hristescu, Craig J. Benham, Martin Farach. pdpta 1997: 610-619

1996

Sites of Superhelical DNA Duplex Destabilization occour at Specific Regulatory RegionsCraig J. Benham. gcb 1997: 46-52

Computation of DNA structural variability - a new predictor of DNA regulatory regionsCraig J. Benham. bioinformatics, 12(5):375-381, 1996.

1995

Of Chicken Teeth and Mouse Eyes, or Generalized Character CompatibilityCraig J. Benham, Sampath Kannan, Tandy Warnow. cpm 1995: 17-26

Hen s Teeth and Whale s Feet: Generalized Characters and Their CompatibilityCraig J. Benham, Sampath Kannan, Michael Paterson, Tandy Warnow. jcb, 2(4):515-525, 1995.

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