Abstract is missing.
- Invited Talk: Phylogenetic Networks with Constrained and Unconstrained RecombinationDan Gusfield. 1-2
- Syntenic Layout of Two Assemblies of Related GenomesOlaf Delgado Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson. 3-12
- Weighted Sequencing from Compomers: DNA de-novo sequencing from mass spectrometry data in the presence of false negative constraintsSebastian Böcker. 13-24
- Multiple sequence alignment with user-defined constraintsBurkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler. 25-36
- SequenceJuxtaposer: Fluid Navigation For Large-Scale Sequence Comparison in ContextJames Slack, Kristian Hildebrand, Tamara Munzner, Katherine St. John. 37-42
- Feature Based Representation and Detection of Transcription Factor Binding SitesRainer Pudimat, Ernst Günter Schukat-Talamazzini, Rolf Backofen. 43-52
- ::::PoSSuMsearch::::: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix ArraysMichael Beckstette, Dirk Strothmann, Robert Homann, Robert Giegerich, Stefan Kurtz. 53-64
- A Method for Fast Approximate Searching of Polypeptide Structures in the PDBHanjo Täubig, Arno Buchner, Jan Griebsch. 65-74
- Kleene s Theorem and the Solution of Metabolic Carbon Labeling SystemsNicole Isermann, Michael Weitzel, Wolfgang Wiechert. 75-84
- Proteochemometrics Modeling of Receptor-Ligand Interactions Using Rough SetsH. Strömbergsson, Peteris Prusis, Herman Midelfart, Jarl E. S. Wikberg, Henryk Jan Komorowski. 85-94
- Independent components analysis of starch deficient ::::pgm:::: mutantsMatthias Scholz, Yves Gibon, Mark Stitt, Joachim Selbig. 95-104
- Genome-wide Analysis of Functions Regulated by Sets of Transcription FactorsSzymon M. Kielbasa, Nils Blüthgen, Hanspeter Herzel. 105-114
- ::::glycosciences.de: :::: An Internet Portal for Glyco-related Data from Open Access ResourcesThomas Götz, Andreas Bohne-Lang, Martin Frank, Klaus Karl Lohmann, Alexander Loß, Thomas Lütteke, Claus-Wilhelm von der Lieth. 115-120
- Invited Talk: Information Flux Through ProteinsGert Vriend. 121-122
- High-throughput molecular dynamics simulations: Long and short range effects of mutations on substrate specificityFabian Bös, Natalia Currle-Linde, Peggy Lindner, Rolf D. Schmid, Jürgen Pleiss. 123-130
- Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active SitesNils Weskamp, Eyke Hüllermeier, Daniel Kuhn, Gerhard Klebe. 131-140
- Combining Secondary Structure Element Alignment and Profile-Profile Alignment for Fold RecognitionJan E. Gewehr, Niklas von Öhsen, Ralf Zimmer. 141-148
- Integrating public databases into an existing protein visualization and modeling program - BRAGIGuido Dieterich, Marsel Kvesic, Dietmar Schomburg, Dirk W. Heinz, Joachim Reichelt. 149-156
- Invited Talk: Inherent Size and Complexity Constraints in Prokaryote Gene Regulatory NetworksMichael Gagen. 159-168
- GoPubMed: ontology-based literature search applied to Gene Ontology and PubMedRalph Delfs, Andreas Doms, Alexander Kozlenkov, Michael Schroeder. 169-178
- Genlight: An Interactive System for High-throughput Sequence Analysis and Comparative GenomicsMichael Beckstette, Alexander Sczyrba, Paul M. Selzer. 179-186
- Invited Talk: Fast Track to Disease-Specific Drugs? The Impact of In-Situ Proteomics Imaging (Toponomics)Walter Schubert. 187-188
- From Composite Patters to Pathways - Prediction of Key Regulators of Gene ExpressionAlexander E. Kel, Nico Voss, Tatiana Konovalova, Dmitri Tchekmenev, P. Wabnitz, Olga V. Kel-Margoulis, Edgar Wingender. 189-198
- Comparison of Centralities for Biological NetworksDirk Koschützki, Falk Schreiber. 199-206
- Conserved RNA PseudoknotsC. Thurner, Ivo L. Hofacker, Peter F. Stadler. 207-216
- Superhelically Destabilized Sites in the E. coli Genome: Implications for Promoter Prediction in ProkaryotesHuiquan Wang, Craig J. Benham. 217-226
- Identification and Measurement of Neigbor Dependent Nucleotide Substitution ProcessesPeter F. Arndt. 227