- María Ruiz Ortega, Mikhail V. Pogorelyy, Anastasia A. Minervina, Paul G. Thomas, Thierry Mora, Aleksandra M. Walczak. Learning predictive signatures of HLA type from T-cell repertoires. PLoS Computational Biology, 21(1):1012724, 2025.
- Charlotte Soneson, Lori A. Shepherd, Marcel Ramos, Kevin C. Rue-Albrecht, Johannes Rainer, Hervé Pagès, Vincent J. Carey. Eleven quick tips for writing a Bioconductor package. PLoS Computational Biology, 21(3):1012856, 2025.
- Luca Oneto, Davide Chicco. Eight quick tips for biologically and medically informed machine learning. PLoS Computational Biology, 21(1):1012711, 2025.
- Daipeng Chen, Xinxin Liu, Haijiang Wang, Roeland M. H. Merks, David A. Baker. A model of Notch signalling control of angiogenesis: Evidence of a role for Notch ligand heterodimerization. PLoS Computational Biology, 21(2):1012825, 2025.
- Alexander R. Kaye, Giorgio Guzzetta, Michael J. Tildesley, Robin N. Thompson. Quantifying infectious disease epidemic risks: A practical approach for seasonal pathogens. PLoS Computational Biology, 21(2):1012364, 2025.
- Yi Cheng, Xingyu Wang, Qiang Zhang, Renkai Ge, Mei Zhou, Yue Dai. Multiple patterns of persistent inward currents with multiple types of repetitive firings in medullary serotonergic neurons of mice: An experimental and modeling study. PLoS Computational Biology, 21(4):1012918, 2025.
- Romain Brette. Theory of axo-axonic inhibition. PLoS Computational Biology, 21(4):1013047, 2025.
- Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean R. Davis, Maria A. Doyle, Ludwig Geistlinger, Andrew R. Ghazi, Susan P. Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson. Learning and teaching biological data science in the Bioconductor community. PLoS Computational Biology, 21(4):1012925, 2025.
- Remy Ben Messaoud, Vincent Le Du, Camile Bousfiha, Marie-Constance Corsi, Juliana Gonzalez-Astudillo, Brigitte Charlotte Kaufmann, Tristan Venot, Baptiste Couvy-Duchesne, Lara Migliaccio, Charlotte Rosso, Paolo Bartolomeo, Mario Chavez, Fabrizio de Vico Fallani. Low-dimensional controllability of brain networks. PLoS Computational Biology, 21(1):1012691, 2025.
- Yanru Jiang, Rick Dale. Mapping the learning curves of deep learning networks. PLoS Computational Biology, 21(2):1012286, 2025.