- Paul Zaharias, Martin Grosshauser, Tandy J. Warnow. Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling. Journal of Computational Biology, 29(1):74-89, 2022.
- Luqin Gan, Giuseppe Vinci, Genevera I. Allen. Correlation Imputation for Single-Cell RNA-seq. Journal of Computational Biology, 29(5):465-482, 2022.
- Keith T. Murray, Mien Brabeeba Wang, Nancy A. Lynch. Emergence of Direction-Selective Retinal Cell Types in Task-Optimized Deep Learning Models. Journal of Computational Biology, 29(4):370-381, 2022.
- Pinar Demetci, Rebecca Santorella, Björn Sandstede, William Stafford Noble, Ritambhara Singh. Single-Cell Multiomics Integration by SCOT. Journal of Computational Biology, 29(1):19-22, 2022.
- Nicholas Franzese, Jason Fan, Roded Sharan, Mark D. M. Leiserson. ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures. Journal of Computational Biology, 29(1):56-73, 2022.
- Arjun Chandrasekhar, Magdalena M. Julkowska. A Mathematical Framework for Analyzing Wild Tomato Root Architecture. Journal of Computational Biology, 29(4):306-316, 2022.
- Lupeng Kong, Fusong Ju, Wei-Mou Zheng, Jianwei Zhu, Shiwei Sun, Jinbo Xu, Dongbo Bu. ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs. Journal of Computational Biology, 29(2):92-105, 2022.
- Yuxuan Du, Sarah M. Laperriere, Jed A. Fuhrman, Fengzhu Sun. Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression. Journal of Computational Biology, 29(2):106-120, 2022.
- HeeWon Park, Rui Yamaguchi, Seiya Imoto, Satoru Miyano. Uncovering Molecular Mechanisms of Drug Resistance via Network-Constrained Common Structure Identification. Journal of Computational Biology, 29(3):257-275, 2022.
- Jeremy Bigness, Xavier Loinaz, Shalin Patel, Erica Larschan, Ritambhara Singh. Integrating Long-Range Regulatory Interactions to Predict Gene Expression Using Graph Convolutional Networks. Journal of Computational Biology, 29(5):409-424, 2022.