Michael A. Charleston - researchr alias

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Viewing Publication 1 - 22 from 22

2016

2015

A time and space complexity reduction for coevolutionary analysis of trees generated under both a Yule and Uniform modelBenjamin Drinkwater, Michael A. Charleston. CANDC, 57:61-71, 2015. [doi]

A Sub-quadratic Time and Space Complexity Solution for the Dated Tree Reconciliation Problem for Select Tree TopologiesBenjamin Drinkwater, Michael A. Charleston. wabi 2015: 93-107 [doi]

Node Handprinting: A Scalable and Accurate Algorithm for Aligning Multiple Biological NetworksAlex Radu, Michael A. Charleston. jcb, 22(7):687-697, 2015. [doi]

Evolving Nutritional Strategies in the Presence of Competition: A Geometric Agent-Based ModelAlistair M. Senior, Michael A. Charleston, Mathieu Lihoreau, Jérôme Buhl, David Raubenheimer, Stephen J. Simpson. ploscb, 11(3), 2015. [doi]

Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMakerCali E. Willet, Bianca Haase, Michael A. Charleston, Claire M. Wade. bioinformatics, 31(4):599-601, 2015. [doi]

2014

Introducing TreeCollapse: a novel greedy algorithm to solve the cophylogeny reconstruction problemBenjamin Drinkwater, Michael A. Charleston. bmcbi, 15(S-16), 2014. [doi]

Node Fingerprinting: An Efficient Heuristic for Aligning Biological NetworksAlex Radu, Michael A. Charleston. jcb, 21(10):760-770, 2014. [doi]

2013

Active Subnetwork Recovery with a Mechanism-Dependent Scoring Function; with application to Angiogenesis and Organogenesis studiesIlana Lichtenstein, Michael A. Charleston, Tiberio S. Caetano, Jennifer R. Gamble, Mathew A. Vadas. bmcbi, 14:59, 2013. [doi]

2011

Verification of phylogenetic Inference Programs Using Metamorphic TestingMd. Shaik Sadi, Fei-Ching Kuo, Joshua W. K. Ho, Michael A. Charleston, T. Y. Chen. jbcb, 9(6):729-747, 2011. [doi]

2009

On the Computational Complexity of the Reticulate Cophylogeny Reconstruction ProblemRan Libeskind-Hadas, Michael A. Charleston. jcb, 16(1):105-117, 2009. [doi]

2008

Differential variability analysis of gene expression and its application to human diseasesJoshua W. K. Ho, Maurizio Stefani, Cristobal G. dos Remedios, Michael A. Charleston. ismb 2008: 390-398 [doi]

2006

Traversing the tangle: Algorithms and applications for cophylogenetic studiesMichael A. Charleston, Susan L. Perkins. jbi, 39(1):62-71, 2006. [doi]

A cophylogenetic perspective on host-pathogen evolutionMichael A. Charleston, Alison P. Galvani. dimacs 2006: 145-160

2001

Hitch-Hiking: A Parallel Heuristic Search Strategy, Applied to the Phylogeny ProblemMichael A. Charleston. jcb, 8(1):79-91, 2001.

1998

Spectrum: spectral analysis of phylogenetic dataMichael A. Charleston. bioinformatics, 14(1):98-99, 1998.

1996

Reconciled trees and incongruent gene and species treesRoderic D. M. Page, Michael A. Charleston. dimacs 1997: 57-70

1995

Toward a Characterization of Landscapes of Combinatorial Optimization Problems, with Special Attention to the Phylogeny ProblemMichael A. Charleston. jcb, 2(3):439-450, 1995.

1994

The Effects of Sequence Length, Tree Topology, and Number of Taxa on the Performance of Phylogenetic MethodsMichael A. Charleston, Michael D. Hendy, David Penny. jcb, 1(2):133-151, 1994. [doi]

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