- Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, Süleyman Cenk Sahinalp. A multi-labeled tree dissimilarity measure for comparing "clonal trees" of tumor progression. Algorithms for Molecular Biology, 14(1), 2019.
- Tuukka Norri, Bastien Cazaux, Dmitry Kosolobov, Veli Mäkinen. Linear time minimum segmentation enables scalable founder reconstruction. Algorithms for Molecular Biology, 14(1), 2019.
- Jimmy Wu, Alex Khodaverdian, Benjamin Weitz, Nir Yosef. Connectivity problems on heterogeneous graphs. Algorithms for Molecular Biology, 14(1), 2019.
- Morteza Chalabi Hajkarim, Eli Upfal, Fabio Vandin. Differentially mutated subnetworks discovery. Algorithms for Molecular Biology, 14(1), 2019.
- Nicola Prezza, Nadia Pisanti, Marinella Sciortino, Giovanna Rosone. SNPs detection by eBWT positional clustering. Algorithms for Molecular Biology, 14(1), 2019.
- Leonid Chindelevitch, Sean La, Joao Meidanis. A cubic algorithm for the generalized rank median of three genomes. Algorithms for Molecular Biology, 14(1), 2019.
- Yue Zhang, Chunfang Zheng, David Sankoff. A branching process for homology distribution-based inference of polyploidy, speciation and loss. Algorithms for Molecular Biology, 14(1), 2019.
- Yohei M. Rosen, Benedict J. Paten. An average-case sublinear forward algorithm for the haploid Li and Stephens model. Algorithms for Molecular Biology, 14(1), 2019.
- Riku Walve, Pasi Rastas, Leena Salmela. Kermit: linkage map guided long read assembly. Algorithms for Molecular Biology, 14(1), 2019.
- Lavinia Egidi, Felipe Alves Louza, Giovanni Manzini, Guilherme P. Telles. External memory BWT and LCP computation for sequence collections with applications. Algorithms for Molecular Biology, 14(1), 2019.