- Ragnar Groot Koerkamp, Daniel Liu, Giulio Ermanno Pibiri. The open-closed mod-minimizer algorithm. Algorithms for Molecular Biology, 20(1):4, December 2025.
- Lore Depuydt, Luca Renders, Simon Van de Vyver, Lennart Veys, Travis Gagie, Jan Fostier. b-move: faster lossless approximate pattern matching in a run-length compressed index. Algorithms for Molecular Biology, 20(1):15, December 2025.
- Anna Lindeberg, Guillaume E. Scholz, Nicolas Wieseke, Marc Hellmuth. Orthology and near-cographs in the context of phylogenetic networks. Algorithms for Molecular Biology, 20(1):19, December 2025.
- Larissa L. M. Aguiar, Felipe A. Louza. Faster computation of left-bounded shortest unique substrings. Algorithms for Molecular Biology, 20(1):11, December 2025.
- Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset. Fractional hitting sets for efficient multiset sketching. Algorithms for Molecular Biology, 20(1):1, December 2025.
- Alitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, Manuel Lafond. The path-label reconciliation (PLR) dissimilarity measure for gene trees. Algorithms for Molecular Biology, 20(1):16, December 2025.
- Théo Boury, Samuel Gardelle, Laurent Bulteau, Yann Ponty. RNA inverse folding can be solved in linear time for structures without isolated stacks or base pairs. Algorithms for Molecular Biology, 20(1):20, December 2025.
- Bertrand Marchand, Nadia Tahiri, Shohreh Golpaigani Fard, Olivier Tremblay Savard, Manuel Lafond. Finding maximum common contractions between phylogenetic networks. Algorithms for Molecular Biology, 20(1):18, December 2025.
- Leena Salmela. Sama: a contig assembler with correctness guarantee. Algorithms for Molecular Biology, 20(1):9, December 2025.
- Jens Zentgraf, Sven Rahmann. Swiftly identifying strongly unique k-mers. Algorithms for Molecular Biology, 20(1):13, December 2025.