- Ragnar Groot Koerkamp, Daniel Liu, Giulio Ermanno Pibiri. The open-closed mod-minimizer algorithm. Algorithms for Molecular Biology, 20(1):4, December 2025.
- Larissa L. M. Aguiar, Felipe A. Louza. Faster computation of left-bounded shortest unique substrings. Algorithms for Molecular Biology, 20(1):11, December 2025.
- Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset. Fractional hitting sets for efficient multiset sketching. Algorithms for Molecular Biology, 20(1):1, December 2025.
- Leena Salmela. Sama: a contig assembler with correctness guarantee. Algorithms for Molecular Biology, 20(1):9, December 2025.
- Mahmudur Rahman Hera, David Koslicki. Estimating similarity and distance using FracMinHash. Algorithms for Molecular Biology, 20(1):8, December 2025.
- Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead. Mem-based pangenome indexing for k-mer queries. Algorithms for Molecular Biology, 20(1):3, December 2025.
- Adam Cicherski, Anna Lisiecka, Norbert Dojer. AlfaPang: alignment free algorithm for pangenome graph construction. Algorithms for Molecular Biology, 20(1):7, December 2025.
- Giovanni Buzzega, Alessio Conte, Roberto Grossi, Giulia Punzi. sc McDag: indexing maximal common subsequences for k strings. Algorithms for Molecular Biology, 20(1):6, December 2025.
- Chris Jennings-Shaffer, David H. Rich, Matthew Macaulay, Michael D. Karcher, Tanvi Ganapathy, Shosuke Kiami, Anna Kooperberg, Cheng Zhang, Marc A. Suchard, Frederick A. Matsen IV. Finding high posterior density phylogenies by systematically extending a directed acyclic graph. Algorithms for Molecular Biology, 20(1):2, December 2025.
- Leonard Bohnenkämper, Jens Stoye, Daniel Doerr. Reconstructing rearrangement phylogenies of natural genomes. Algorithms for Molecular Biology, 20(1):10, December 2025.