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- Kuan Xie, Yuying Hou, Xionghui Zhou. Deep centroid: a general deep cascade classifier for biomedical omics data classification. Bioinformatics, 40(2), February 2024.
- J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, HyeongSik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall. Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. Bioinformatics, 40(3), March 2024.
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- Jeffrey K. Ng, Tychele Turner. de novo variant calling for highly accurate short-read and long-read sequencing data. Bioinformatics, 40(1), January 2024.
- David Koslicki, Stephen White, Chunyu Ma, Alexei Novikov. YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample. Bioinformatics, 40(2), February 2024.
- Shreyas Arvindekar, Aditi S. Pathak, Kartik Majila, Shruthi Viswanath. Optimizing representations for integrative structural modeling using Bayesian model selection. Bioinformatics, 40(3), March 2024.
- Qiao Jin 0001, Yifan Yang, Qingyu Chen 0001, Zhiyong Lu. GeneGPT: augmenting large language models with domain tools for improved access to biomedical information. Bioinformatics, 40(2), February 2024.
- Carson M. Andorf, Olivia C. Haley, Rita K. Hayford, John L. Portwood II, Stephen Harding, Shatabdi Sen, Ethalinda K. S. Cannon, Jack M. Gardiner, Hye Seon Kim, Margaret Woodhouse. PanEffect: a pan-genome visualization tool for variant effects in maize. Bioinformatics, 40(2), February 2024.