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- Ben Langmead, Christopher Wilks, Valentin Antonescu, Rone Charles. Scaling read aligners to hundreds of threads on general-purpose processors. Bioinformatics, 35(3):421-432, 2019.
- Nelson Gil, András Fiser. The choice of sequence homologs included in multiple sequence alignments has a dramatic impact on evolutionary conservation analysis. Bioinformatics, 35(1):12-19, 2019.
- Yu-Chen Lo, Tianyun Liu, Kari M. Morrissey, Satoko Kakiuchi-Kiyota, Adam R. Johnson, Fabio Broccatelli, Yu Zhong, Amita Joshi, Russ B. Altman. Computational analysis of kinase inhibitor selectivity using structural knowledge. Bioinformatics, 35(2):235-242, 2019.
- Wei Zheng, Qi Mao, Robert J. Genco, Jean Wactawski-Wende, Michael Buck, Yunpeng Cai, Yijun Sun. A parallel computational framework for ultra-large-scale sequence clustering analysis. Bioinformatics, 35(3):380-388, 2019.
- Sebastian Deorowicz, Joanna Walczyszyn, Agnieszka Debudaj-Grabysz. CoMSA: compression of protein multiple sequence alignment files. Bioinformatics, 35(2):227-234, 2019.
- Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura. BIPSPI: a method for the prediction of partner-specific protein-protein interfaces. Bioinformatics, 35(3):470-477, 2019.
- Clément Frainay, Sandrine Aros, Maxime Chazalviel, Thomas Garcia, Florence Vinson, Nicolas Weiss, Benoit Colsch, Frédéric Sedel, Dominique Thabut, Christophe Junot, Fabien Jourdan. MetaboRank: network-based recommendation system to interpret and enrich metabolomics results. Bioinformatics, 35(2):274-283, 2019.
- Christian X. Weichenberger, Johannes Rainer, Cristian Pattaro, Peter P. Pramstaller, Francisco S. Domingues. Comparative assessment of different familial aggregation methods in the context of large and unstructured pedigrees. Bioinformatics, 35(1):69-76, 2019.
- Joeri J. Meijsen, Alexandros Rammos, Archie Campbell, Caroline Hayward, David J. Porteous, Ian J. Deary, Riccardo E. Marioni, Kristin K. Nicodemus. Using tree-based methods for detection of gene-gene interactions in the presence of a polygenic signal: simulation study with application to educational attainment in the Generation Scotland Cohort Study. Bioinformatics, 35(2):181-188, 2019.