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- Mikaela Koutrouli, Katerina C. Nastou, Pau Piera Líndez, Robbin Bouwmeester, Simon Rasmussen, Lennart Martens, Lars Juhl Jensen. FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. Bioinformatics, 40(2), February 2024.
- Kuan Xie, Yuying Hou, Xionghui Zhou. Deep centroid: a general deep cascade classifier for biomedical omics data classification. Bioinformatics, 40(2), February 2024.
- Andrew Dickson, Mohammad R. K. Mofrad. Fine-tuning protein embeddings for functional similarity evaluation. Bioinformatics, 40(8), 2024.
- J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, HyeongSik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall. Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. Bioinformatics, 40(3), March 2024.
- Yash Patel, Arpi Beshlikyan, Madison Jordan, Gina Kim, Aaron Holmes, Takafumi N. Yamaguchi, Paul C. Boutros. PipeVal: light-weight extensible tool for file validation. Bioinformatics, 40(2), February 2024.
- Kristofer Sandås, Jacob Lewerentz, Edvin Karlsson, Linda Karlsson, David Sundell, Kotryna Simonyté-Sjödin, Andreas Sjödin. Nanometa Live: a user-friendly application for real-time metagenomic data analysis and pathogen identification. Bioinformatics, 40(3), March 2024.
- Jeffrey K. Ng, Tychele Turner. de novo variant calling for highly accurate short-read and long-read sequencing data. Bioinformatics, 40(1), January 2024.
- David Koslicki, Stephen White, Chunyu Ma, Alexei Novikov. YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample. Bioinformatics, 40(2), February 2024.
- Oliver Pain, Ammar Al-Chalabi, Cathryn M. Lewis. The GenoPred pipeline: a comprehensive and scalable pipeline for polygenic scoring. Bioinformatics, 40(10), 2024.