Genevieve L. Stein-O'Brien - researchr alias

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Viewing Publication 1 - 5 from 5

2023

Transcriptomic forecasting with neural ordinary differential equationsRossin Erbe, Genevieve L. Stein-O'Brien, Elana J. Fertig. patterns, 4(8):100793, August 2023. [doi]

2020

projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clusteringGaurav Sharma, Carlo Colantuoni, Loyal A. Goff, Elana J. Fertig, Genevieve L. Stein-O'Brien. bioinformatics, 36(11):3592-3593, 2020. [doi]

2019

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancerThomas Sherman, Luciane T. Kagohara, Raymon Cao, Raymond Cheng, Matthew Satriano, Michael Considine, Gabriel Krigsfeld, Ruchira Ranaweera, Yong Tang, Sandra A. Jablonski, Genevieve L. Stein-O'Brien, Daria A. Gaykalova, Louis M. Weiner, Christine H. Chung, Elana J. Fertig. ploscb, 15(4), 2019. [doi]

2018

Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancerBahman Afsari, Theresa Guo, Michael Considine, Liliana Florea, Luciane T. Kagohara, Genevieve L. Stein-O'Brien, Dylan Kelley, Emily Flam, Kristina D. Zambo, Patrick K. Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig. bioinformatics, 34(11):1859-1867, 2018. [doi]

2017

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMFGenevieve L. Stein-O'Brien, Jacob L. Carey, Waishing Lee, Michael Considine, Alexander V. Favorov, Emily Flam, Theresa Guo, Sijia Li, Luigi Marchionni, Thomas Sherman, Shawn Sivy, Daria A. Gaykalova, Ronald McKay, Michael F. Ochs, Carlo Colantuoni, Elana J. Fertig. bioinformatics, 33(12):1892-1894, 2017. [doi]

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