- Correction to: DeepFormer: a hybrid network based on convolutional neural network and flow-attention mechanism for identifying the function of DNA sequences. Briefings in Bioinformatics, 25(3), 2024.
- Ming-Siang Huang, Jen-Chieh Han, Pei-Yen Lin, Yu-Ting You, Richard Tzong-Han Tsai, Wen-Lian Hsu. Surveying biomedical relation extraction: a critical examination of current datasets and the proposal of a new resource. Briefings in Bioinformatics, 25(3), 2024.
- Emily McLeish, Nataliya Slater, Frank L. Mastaglia, Merrilee Needham, Jerome D. Coudert. Balancing Clinical Applicability and Scientific Depth in ML Models for MDA5-DM Prognosis. Briefings in Bioinformatics, 25(4), 2024.
- Sergio-Llaneza Lago, William D. Fraser, Darrell Green. Bayesian unsupervised clustering identifies clinically relevant osteosarcoma subtypes. Briefings in Bioinformatics, 26(1), 2024.
- Han Phan, Céline Brouard, Raphaël Mourad. Semi-supervised learning with pseudo-labeling compares favorably with large language models for regulatory sequence prediction. Briefings in Bioinformatics, 25(6), 2024.
- Minghao Fang, Jingwen Fang, Songwen Luo, Ke Liu, Qiaoni Yu, Jiaxuan Yang, Youyang Zhou, Zongkai Li, Ruoming Sun, Chuang Guo, Kun Qu. eccDNA-pipe: an integrated pipeline for identification, analysis and visualization of extrachromosomal circular DNA from high-throughput sequencing data. Briefings in Bioinformatics, 25(2), January 2024.
- Jingxuan Qiu, Wanchun Nie, Hao Ding, Jia Dai, Yiwen Wei, Dezhi Li, Yuxi Zhang, Junting Xie, Xinxin Tian, Nannan Wu, Tianyi Qiu. PB-LKS: a python package for predicting phage-bacteria interaction through local K-mer strategy. Briefings in Bioinformatics, 25(2), January 2024.
- Yi-Heng Zhu, Zi Liu, Yan Liu 0038, Zhiwei Ji, Dong-jun Yu. ULDNA: integrating unsupervised multi-source language models with LSTM-attention network for high-accuracy protein-DNA binding site prediction. Briefings in Bioinformatics, 25(2), January 2024.
- Hangjia Zhao, Michael Baudis. labelSeg: segment annotation for tumor copy number alteration profiles. Briefings in Bioinformatics, 25(2), January 2024.
- Sandeep Singh, Xinrui Shi, Samuel Haddox, Justin Elfman, Syed Basil Ahmad, Sarah Lynch, Tommy Manley, Claire Piczak, Christopher Phung, Yunan Sun, Aadi Sharma, Hui Li. RTCpredictor: identification of read-through chimeric RNAs from RNA sequencing data. Briefings in Bioinformatics, 25(4), 2024.