Abstract is missing.
- An Interactive Map of Regulatory Networks of ::::Pseudomonas aeruginosa:::: GenomeWeihui Wu, Yongling Song, Shouguang Jin, Su-Shing Chen. 1-10 [doi]
- The Pathalyzer: A Tool for Analysis of Signal Transduction PathwaysDavid L. Dill, Merrill Knapp, Pamela Gage, Carolyn L. Talcott, Keith Laderoute, Patrick Lincoln. 11-22 [doi]
- Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein AssociationsElena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka. 23-38 [doi]
- Comparison of Protein-Protein Interaction Confidence Assignment SchemesSilpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker. 39-50 [doi]
- Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPsMichal Lapidot, Yitzhak Pilpel. 51-61 [doi]
- Comparative Systems Biology of the Sporulation Initiation Network in ProkaryotesMichiel J. L. de Hoon, Dennis Vitkup. 62-69 [doi]
- Improvement of Computing Times in Boolean Networks Using Chi-square TestsHaseong Kim, Jae K. Lee, Taesung Park. 70-79 [doi]
- Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory ElementsGuandong Wang, Weixiong Zhang. 80-94 [doi]
- Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression PhenotypesDavid Kulp, Manjunatha Jagalur. 95-106 [doi]
- Examination of the tRNA Adaptation Index as a Predictor of Protein Expression LevelsOrna Man, Joel L. Sussman, Yitzhak Pilpel. 107-118 [doi]
- Improved Duplication Models for Proteome Network EvolutionGürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp. 119-137 [doi]
- Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray AnalysisChih-Yu Chen, Von-Wun Soo, Chi-Li Kuo. 138-149 [doi]
- Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic DataElissa J. Chesler, Michael A. Langston. 150-165 [doi]
- Topological Robustness of the Protein-Protein Interaction NetworksChien-Hung Huang, Jywe-Fei Fang, Jeffrey J. P. Tsai, Ka-Lok Ng. 166-177 [doi]
- A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to ::::Saccharomyces Cerevisiae:::: Cell Cycle DataSudhakar Jonnalagadda, Rajagopalan Srinivasan. 178-187 [doi]
- Probabilistic ::::in Silico:::: Prediction of Protein-Peptide InteractionsWolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams. 188-197 [doi]
- Improved Pattern-Driven Algorithms for Motif Finding in DNA SequencesSing-Hoi Sze, Xiaoyan Zhao. 198-211 [doi]
- Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence PropertiesHuiquan Wang, Craig J. Benham. 212-224 [doi]
- An Interaction-Dependent Model for Transcription Factor BindingLi-San Wang, Shane T. Jensen, Sridhar Hannenhalli. 225-234 [doi]
- Computational Characterization and Identification of Core Promoters of MicroRNA Genes in ::::C. elegans:::: , ::::H. sapiens:::: and ::::A. thaliana::::Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang. 235-248 [doi]
- A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction MechanismAviv Mezer, Eran Bosis, Uri Ashery, Esther Nachliel, Menachem Gutman. 249-257 [doi]