Ernesto Pérez-Rueda - researchr alias

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Viewing Publication 1 - 13 from 13

2022

Machine learning and statistics shape a novel path in archaeal promoter annotationGustavo Sganzerla Martinez, Ernesto Pérez-Rueda, Sharmilee Sarkar, Aditya Kumar, Scheila de Avila e Silva. bmcbi, 23(1):171, 2022. [doi]

2016

2015

Hybrid approaches for the detection of networks of critical residues involved in functional motions in protein familiesDagoberto Armenta-Medina, Ernesto Pérez-Rueda. bmcbi, 16(S-3), 2015. [doi]

The functional landscape bound to the transcription factors of Escherichia coli K-12Ernesto Pérez-Rueda, Silvia Tenorio-Salgado, Alejandro Huerta-Saquero, Yalbi I. Balderas-Martínez, Gabriel Moreno-Hagelsieb. CANDC, 58:93-103, 2015. [doi]

Distribution of putative xenogeneic silencers in prokaryote genomesErnesto Pérez-Rueda, J. Antonio Ibarra. CANDC, 58:167-172, 2015. [doi]

2013

Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilisJulio A. Freyre-González, Alejandra M. Manjarrez-Casas, Enrique Merino, Mario Martinez-Nuñez, Ernesto Pérez-Rueda, Rosa-María Gutiérrez-Ríos. bmcsb, 7:127, 2013. [doi]

2011

New insights on gene regulation in archaeaSilvia Tenorio-Salgado, Alejandro Huerta-Saquero, Ernesto Pérez-Rueda. CANDC, 35(6):341-346, 2011. [doi]

2009

Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory familiesSarath Chandra Janga, Ernesto Pérez-Rueda. CANDC, 33(4):261-268, 2009. [doi]

2007

Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteinsArmando Hernandez-Mendoza, Carmen Quinto, Lorenzo Segovia, Ernesto Pérez-Rueda. CANDC, 31(2):115-123, 2007. [doi]

2005

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomesAbel D. González, Vladimir Espinosa Angarica, Ana Tereza R. Vasconcelos, Ernesto Pérez-Rueda, Julio Collado-Vides. nar, 33(Database-Issue):98-102, 2005. [doi]

2004

Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaeaErnesto Pérez-Rueda, Julio Collado-Vides, Lorenzo Segovia. CANDC, 28(5-6):341-350, 2004. [doi]

2002

Genomics of Gene Regulation: The View from Escherichia coliJulio Collado-Vides, Gabriel Moreno-Hagelsieb, Ernesto Pérez-Rueda, Heladia Salgado, Araceli M. Huerta, Rosa María Gutiérrez, David A. Rosenblueth, Andrés Christen, Esperanza Benítez-Bellón, Arturo Medrano-Soto, Socorro Gama-Castro, Alberto Santos-Zavaleta, César Bonavides-Martínez, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Dulce María Millá. Dagstuhl 2002: 103-128

2001

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12Heladia Salgado, Alberto Santos-Zavaleta, Socorro Gama-Castro, Dulce Millán-Zárate, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Ernesto Pérez-Rueda, César Bonavides-Martínez, Julio Collado-Vides. nar, 29(1):72-74, 2001.

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