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Viewing Publication 1 - 64 from 64

2026

VitaMol: Lightweight molecular modality expansion in discrete space for multi-task transfer learningYunfan Liu 0002, Zhifeng Gao, Lirong Wu, Jingbo Zhou, Tongyue Xu, Cheng Tan 0012, Yufei Huang 0002, Changxi Chi, Chang Yu 0001, Stan Z. Li. PR, 177:113319, 2026. [doi]

2025

EVA: Geometric Inverse Design for Fast Protein Motif-Scaffolding with Coupled FlowYufei Huang 0002, Yunshu Liu, Lirong Wu, Haitao Lin, Cheng Tan 0012, Odin Zhang, Zhangyang Gao, Siyuan Li 0002, Zicheng Liu 0006, Yunfan Liu 0002, Tailin Wu, Stan Z. Li. iclr 2025: [doi]

DaCapo: Score Distillation as Stacked Bridge for Fast and High-quality 3D EditingYufei Huang 0002, Bangyan Liao, Yuqi Hu, Haitao Lin, Lirong Wu, Siyuan Li 0002, Cheng Tan 0012, Zicheng Liu 0006, Yunfan Liu 0002, Zelin Zang, Chang Yu 0001, Zhen Lei 0001. cvpr 2025: 16304-16313 [doi]

Cooperative Dynamic Target Tracking: Distributed Time-Varying Optimization for Multi-UAV SystemBoyang Zhang 0002, Yueqi Hou, Hang Yin, Maolong Lv, Aiwu Yang, Lirong Wu. taes, 61(5):12245-12257, October 2025. [doi]

dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding AntigenCheng Tan 0012, Yijie Zhang, Zhangyang Gao, Yufei Huang 0002, Haitao Lin, Lirong Wu, Fandi Wu, Mathieu Blanchette, Stan Z. Li. AAAI 2025: 782-790 [doi]

MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification PredictionCheng Tan 0012, Zhenxiao Cao, Zhangyang Gao, Lirong Wu, Siyuan Li 0002, Yufei Huang 0002, Jun Xia 0001, Bozhen Hu, Stan Z. Li. iclr 2025: [doi]

FoldToken: Learning Protein Language via Vector Quantization and BeyondZhangyang Gao, Cheng Tan 0012, Jue Wang 0004, Yufei Huang 0002, Lirong Wu, Stan Z. Li. AAAI 2025: 219-227 [doi]

An Extensive Survey With Empirical Studies on Deep Temporal Point ProcessHaitao Lin, Cheng Tan 0012, Lirong Wu, Zicheng Liu 0006, Zhangyang Gao, Stan Z. Li. tkde, 37(4):1599-1619, April 2025. [doi]

CBGBench: Fill in the Blank of Protein-Molecule Complex Binding GraphHaitao Lin, Guojiang Zhao, Odin Zhang, Yufei Huang 0002, Lirong Wu, Cheng Tan 0012, Zicheng Liu 0006, Zhifeng Gao, Stan Z. Li. iclr 2025: [doi]

Manufacturer Strategies for Blockchain Adoption and Sales Mode Selection with a Dual-Purpose PlatformLirong Wu, Congying Duan, Qingkai Ji. systems, 13(6):458, 2025. [doi]

Learning to Model Graph Structural Information on MLPs via Graph Structure Self-ContrastingLirong Wu, Haitao Lin, Guojiang Zhao, Cheng Tan 0012, Stan Z. Li. tnn, 36(7):12772-12783, July 2025. [doi]

A Simple yet Effective ΔΔG Predictor is An Unsupervised Antibody Optimizer and ExplainerLirong Wu, Yunfan Liu 0002, Haitao Lin, Yufei Huang 0002, Guojiang Zhao, Zhifeng Gao, Stan Z. Li. iclr 2025: [doi]

Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity OptimizationLirong Wu, Haitao Lin, Yufei Huang 0002, Zhangyang Gao, Cheng Tan 0012, Yunfan Liu 0012, Tailin Wu, Stan Z. Li. AAAI 2025: 895-904 [doi]

Data-Driven Parametrization of All-Atom Force Fields for Organic SemiconductorsGuojiang Zhao, Taiping Hu, Yingfeng Zhang, Hongshuai Wang, Lirong Wu, Shuqi Lu, Fengtianci Yang, Shangqian Chen, Zhifeng Gao, Xinyan Wang, Zheng Cheng. jcisd, 65(14):7632-7638, 2025. [doi]

2024

Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion BridgeYufei Huang 0002, Odin Zhang, Lirong Wu, Cheng Tan 0012, Haitao Lin, Zhangyang Gao, Siyuan Li, Stan Z. Li. icml 2024: 20474-20489 [doi]

Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching PerspectiveCheng Tan 0012, Zhangyang Gao, Hanqun Cao, Xingran Chen, Ge Wang, Lirong Wu, Jun Xia, Jiangbin Zheng, Stan Z. Li. icml 2024: 47564-47578 [doi]

Cross-Gate MLP with Protein Complex Invariant Embedding Is a One-Shot Antibody DesignerCheng Tan 0012, Zhangyang Gao, Lirong Wu, Jun Xia, Jiangbin Zheng, Xihong Yang, Yue Liu 0008, Bozhen Hu, Stan Z. Li. AAAI 2024: 15222-15230 [doi]

A Fast BP Imaging Algorithm Based on Coordinate System GroupingShichao Chen, Yabo Liu, Lirong Wu, Ling Wang, Ming Liu. igarss 2024: 11388-11391 [doi]

Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training TasksTianyu Fan, Lirong Wu, Yufei Huang 0002, Haitao Lin, Cheng Tan 0012, Zhangyang Gao, Stan Z. Li. iclr 2024: [doi]

UniIF: Unified Molecule Inverse FoldingZhangyang Gao, Jue Wang 0004, Cheng Tan 0012, Lirong Wu, Yufei Huang 0002, Siyuan Li 0002, Zhirui Ye, Stan Z. Li. nips 2024: [doi]

ProtGO: Function-Guided Protein Modeling for Unified Representation LearningBozhen Hu, Cheng Tan 0012, Yongjie Xu, Zhangyang Gao, Jun Xia 0001, Lirong Wu, Stan Z. Li. nips 2024: [doi]

Learning Complete Protein Representation by Dynamically Coupling of Sequence and StructureBozhen Hu, Cheng Tan 0012, Jun Xia 0001, Yue Liu 0008, Lirong Wu, Jiangbin Zheng, Yongjie Xu, Yufei Huang 0002, Stan Z. Li. nips 2024: [doi]

Protein 3D Graph Structure Learning for Robust Structure-Based Protein Property PredictionYufei Huang, Siyuan Li, Lirong Wu, Jin Su, Haitao Lin, Odin Zhang, Zihan Liu, Zhangyang Gao, Jiangbin Zheng, Stan Z. Li. AAAI 2024: 12662-12670 [doi]

PPFLOW: Target-Aware Peptide Design with Torsional Flow MatchingHaitao Lin, Odin Zhang, Huifeng Zhao, Dejun Jiang 0002, Lirong Wu, Zicheng Liu 0006, Yufei Huang 0002, Stan Z. Li. icml 2024: 30510-30528 [doi]

GeoAB: Towards Realistic Antibody Design and Reliable Affinity MaturationHaitao Lin, Lirong Wu, Yufei Huang 0002, Yunfan Liu 0002, Odin Zhang, Yuanqing Zhou, Rui Sun, Stan Z. Li. icml 2024: 30346-30361 [doi]

Beyond Homophily and Homogeneity Assumption: Relation-Based Frequency Adaptive Graph Neural NetworksLirong Wu, Haitao Lin, Bozhen Hu, Cheng Tan 0012, Zhangyang Gao, Zicheng Liu 0006, Stan Z. Li. tnn, 35(6):8497-8509, June 2024. [doi]

A Teacher-Free Graph Knowledge Distillation Framework With Dual Self-DistillationLirong Wu, Haitao Lin, Zhangyang Gao, Guojiang Zhao, Stan Z. Li. tkde, 36(9):4375-4385, September 2024. [doi]

Homophily-Enhanced Self-Supervision for Graph Structure Learning: Insights and DirectionsLirong Wu, Haitao Lin, Zihan Liu, Zicheng Liu 0006, Yufei Huang 0002, Stan Z. Li. tnn, 35(9):12358-12372, September 2024. [doi]

Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt LearningLirong Wu, Yijun Tian 0001, Haitao Lin, Yufei Huang 0002, Siyuan Li, Nitesh V. Chawla, Stan Z. Li. icml 2024: 53847-53859 [doi]

MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein EmbeddingLirong Wu, Yijun Tian 0001, Yufei Huang 0002, Siyuan Li, Haitao Lin, Nitesh V. Chawla, Stan Z. Li. iclr 2024: [doi]

Teach Harder, Learn Poorer: Rethinking Hard Sample Distillation for GNN-to-MLP Knowledge DistillationLirong Wu, Yunfan Liu 0002, Haitao Lin, Yufei Huang 0002, Stan Z. Li. CIKM 2024: 2554-2563 [doi]

PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction PredictionLirong Wu, Yufei Huang, Cheng Tan 0012, Zhangyang Gao, Bozhen Hu, Haitao Lin, Zicheng Liu 0006, Stan Z. Li. AAAI 2024: 310-319 [doi]

GNN Cleaner: Label Cleaner for Graph Structured DataJun Xia, Haitao Lin, Yongjie Xu, Cheng Tan 0012, Lirong Wu, Siyuan Li, Stan Z. Li. tkde, 36(2):640-651, February 2024. [doi]

2023

Harnessing Hard Mixed Samples with Decoupled RegularizerZicheng Liu 0006, Siyuan Li, Ge Wang, Lirong Wu, Cheng Tan 0012, Stan Z. Li. nips 2023: [doi]

OpenSTL: A Comprehensive Benchmark of Spatio-Temporal Predictive LearningCheng Tan 0012, Siyuan Li, Zhangyang Gao, Wenfei Guan, Zedong Wang, Zicheng Liu 0006, Lirong Wu, Stan Z. Li. nips 2023: [doi]

Temporal Attention Unit: Towards Efficient Spatiotemporal Predictive LearningCheng Tan 0012, Zhangyang Gao, Lirong Wu, Yongjie Xu, Jun Xia, Siyuan Li, Stan Z. Li. cvpr 2023: 18770-18782 [doi]

ProteinInvBench: Benchmarking Protein Inverse Folding on Diverse Tasks, Models, and MetricsZhangyang Gao, Cheng Tan 0012, Yijie Zhang, Xingran Chen, Lirong Wu, Stan Z. Li. nips 2023: [doi]

Deep Manifold Graph Auto-Encoder For Attributed Graph EmbeddingBozhen Hu, Zelin Zang, Jun Xia, Lirong Wu, Cheng Tan 0012, Stan Z. Li. icassp 2023: 1-5 [doi]

Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and ElaborationHaitao Lin, Yufei Huang, Odin Zhang, Yunfan Liu, Lirong Wu, Siyuan Li, Zhiyuan Chen 0008, Stan Z. Li. nips 2023: [doi]

Self-Supervised Learning on Graphs: Contrastive, Generative, or PredictiveLirong Wu, Haitao Lin, Cheng Tan 0012, Zhangyang Gao, Stan Z. Li. tkde, 35(4):4216-4235, April 2023. [doi]

Deep Clustering and Visualization for End-to-End High-Dimensional Data AnalysisLirong Wu, Lifan Yuan, Guojiang Zhao, Haitao Lin, Stan Z. Li. tnn, 34(11):8543-8554, November 2023. [doi]

Quantifying the Knowledge in GNNs for Reliable Distillation into MLPsLirong Wu, Haitao Lin, Yufei Huang, Stan Z. Li. icml 2023: 37571-37581 [doi]

Learning to Augment Graph Structure for both Homophily and Heterophily GraphsLirong Wu, Cheng Tan 0012, Zihan Liu, Zhangyang Gao, Haitao Lin, Stan Z. Li. pkdd 2023: 3-18 [doi]

Extracting Low-/High- Frequency Knowledge from Graph Neural Networks and Injecting It into MLPs: An Effective GNN-to-MLP Distillation FrameworkLirong Wu, Haitao Lin, Yufei Huang, Tianyu Fan, Stan Z. Li. AAAI 2023: 10351-10360 [doi]

2022

AutoMix: Unveiling the Power of Mixup for Stronger ClassifiersZicheng Liu 0006, Siyuan Li, Di Wu, Zihan Liu, Zhiyuan Chen 0008, Lirong Wu, Stan Z. Li. eccv 2022: 441-458 [doi]

Hyperspherical Consistency RegularizationCheng Tan 0012, Zhangyang Gao, Lirong Wu, Siyuan Li, Stan Z. Li. cvpr 2022: 7234-7245 [doi]

SimVP: Simpler yet Better Video PredictionZhangyang Gao, Cheng Tan 0012, Lirong Wu, Stan Z. Li. cvpr 2022: 3160-3170 [doi]

Exploring Generative Neural Temporal Point ProcessHaitao Lin, Lirong Wu, Guojiang Zhao, Pai Liu, Stan Z. Li. tmlr, 2022, 2022. [doi]

Conditional Local Convolution for Spatio-Temporal Meteorological ForecastingHaitao Lin, Zhangyang Gao, Yongjie Xu, Lirong Wu, Ling Li, Stan Z. Li. AAAI 2022: 7470-7478 [doi]

Towards Reasonable Budget Allocation in Untargeted Graph Structure Attacks via Gradient DebiasZihan Liu, Yun Luo, Lirong Wu, Zicheng Liu 0006, Stan Z. Li. nips 2022: [doi]

Are Gradients on Graph Structure Reliable in Gray-box Attacks?Zihan Liu, Yun Luo, Lirong Wu, Siyuan Li, Zicheng Liu 0006, Stan Z. Li. CIKM 2022: 1360-1368 [doi]

Knowledge Distillation Improves Graph Structure Augmentation for Graph Neural NetworksLirong Wu, Haitao Lin, Yufei Huang, Stan Z. Li. nips 2022: [doi]

Multi-level disentanglement graph neural networkLirong Wu, Haitao Lin, Jun Xia, Cheng Tan 0012, Stan Z. Li. nca, 34(11):9087-9101, 2022. [doi]

Generalized Clustering and Multi-Manifold Learning with Geometric Structure PreservationLirong Wu, Zicheng Liu 0006, Jun Xia, Zelin Zang, Siyuan Li, Stan Z. Li. wacv 2022: 1668-1676 [doi]

GraphMixup: Improving Class-Imbalanced Node Classification by Reinforcement Mixup and Self-supervised Context PredictionLirong Wu, Jun Xia, Zhangyang Gao, Haitao Lin, Cheng Tan 0012, Stan Z. Li. pkdd 2023: 519-535 [doi]

ProGCL: Rethinking Hard Negative Mining in Graph Contrastive LearningJun Xia, Lirong Wu, Ge Wang, Jintao Chen, Stan Z. Li. icml 2022: 24332-24346 [doi]

OT Cleaner: Label Correction as Optimal TransportJun Xia, Cheng Tan 0012, Lirong Wu, Yongjie Xu, Stan Z. Li. icassp 2022: 3953-3957 [doi]

SimGRACE: A Simple Framework for Graph Contrastive Learning without Data AugmentationJun Xia, Lirong Wu, Jintao Chen, Bozhen Hu, Stan Z. Li. WWW 2022: 1070-1079 [doi]

2021

2020

A GAN-based Tunable Image Compression SystemLirong Wu, Kejie Huang, Haibin Shen. wacv 2020: 2323-2331 [doi]

2011

SMS-based Mobile Recommendation System for Campus Recruitment in ChinaXiangpei Hu, Lirong Wu, Chao Li, Minfang Huang. icmb 2011: 152-157 [doi]

2006

Ramp Shape Optimum Design for Airplane Land-Based Ski-Jump Takeoff via NSGA IIXun-Kai Wei, Chong Duan, Ying-Hong Li, Lirong Wu. isda 2006: 995-1000 [doi]

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