Niles A. Pierce - researchr alias

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Viewing Publication 1 - 9 from 9

2011

Nucleic acid sequence design via efficient ensemble defect optimizationJoseph N. Zadeh, Brian R. Wolfe, Niles A. Pierce. jcc, 32(3):439-452, 2011. [doi]

NUPACK: Analysis and design of nucleic acid systemsJoseph N. Zadeh, Conrad Steenberg, Justin S. Bois, Brian R. Wolfe, Marshall B. Pierce, Asif R. Khan, Robert M. Dirks, Niles A. Pierce. jcc, 32(1):170-173, 2011. [doi]

2007

Thermodynamic Analysis of Interacting Nucleic Acid StrandsRobert M. Dirks, Justin S. Bois, Joseph M. Schaeffer, Erik Winfree, Niles A. Pierce. siamrev, 49(1):65-88, 2007. [doi]

2006

Nanoscale Molecular Transport by Synthetic DNA MachinesJong-Shik Shin, Niles A. Pierce. In Nanotechnology: Science and Computation. 2006: 175-188 [doi]

2004

An algorithm for computing nucleic acid base-pairing probabilities including pseudoknotsRobert M. Dirks, Niles A. Pierce. jcc, 25(10):1295-1304, 2004. [doi]

2003

A partition function algorithm for nucleic acid secondary structure including pseudoknotsRobert M. Dirks, Niles A. Pierce. jcc, 24(13):1664-1677, 2003. [doi]

Exact rotamer optimization for protein designD. Benjamin Gordon, Geoffrey K. Hom, Stephen L. Mayo, Niles A. Pierce. jcc, 24(2):232-243, 2003. [doi]

2000

Conformational splitting: A more powerful criterion for dead-end eliminationNiles A. Pierce, Jan A. Spriet, J. Desmet, Stephen L. Mayo. jcc, 21(11):999-1009, 2000. [doi]

Adjoint Recovery of Superconvergent Functionals from PDE ApproximationsNiles A. Pierce, Michael B. Giles. siamrev, 42(2):247-264, 2000. [doi]

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