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CIBCB (cibcb)
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Viewing Publication 1 - 100 from 933
2023
IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2023, Eindhoven, Netherlands, August 29-31, 2023
IEEE,
2023.
[doi]
Explaining Body Composition After Bariatric Surgery using Accelerometry
A. T. M. Shakil Ahamed
,
Ryan E. R. Reid
,
James Alexander Hughes
,
Ross E. Andersen
.
cibcb 2023
:
1-8
[doi]
Harnessing Digital Pathology And Causal Learning To Improve Eosinophilic Esophagitis Dietary Treatment Assignment
Eliel Aknin
,
Ariel Larey
,
Julie M. Caldwell
,
Margaret H. Collins
,
Marc E. Rothenberg
,
Yonatan Savir
.
cibcb 2023
:
1-8
[doi]
Conversion of Pixel to Millimeter in Ultrasound Images: A Methodological Approach and Dataset
Mahmood Alzubaidi
,
Uzair Shah
,
Hurmat Shah 0002
,
Mowafa S. Househ
.
cibcb 2023
:
1-6
[doi]
Effective Vaccination Strategy for Infectious Diseases by Analyzing the Age and Comorbidity Attributes of Individuals on Social Network
Sumaiya Amin
,
Derrick G. Lee
,
James Alexander Hughes
.
cibcb 2023
:
1-9
[doi]
PEvoLM: Protein Sequence Evolutionary Information Language Model
Issar Arab
.
cibcb 2023
:
1-8
[doi]
Reservoir Computing Model For Multi-Electrode Electrophysiological Data Analysis
Ilya Auslender
,
Lorenzo Pavesi
.
cibcb 2023
:
1-6
[doi]
Unsupervised Temporal Analysis of Mouse Vocalizations
Christodoulos Bochalis
,
César D. M. Vargas
,
Erich D. Jarvis
,
Theodoros Giannakopoulos
.
cibcb 2023
:
1-8
[doi]
Territorial clusters of mortality and role of social and environmental factors: the case of ULSS 6 Euganea (Italy)
Enrico Bovo
,
Pietro Belloni
,
Andrea Sottosanti
,
Giovanna Boccuzzo
.
cibcb 2023
:
1-5
[doi]
AI Deployment in Medical Devices-Ethical and Regulaltory Reflections, Beyond Data Protection and Bias - EU perspective
Tomasz Braun
,
Dominika Ewa Harasimiuk
.
cibcb 2023
:
1-6
[doi]
A tissue-aware simulation framework for [18F]FLT spatiotemporal uptake in pancreatic ductal adenocarcinoma
Lara Cavinato
,
Jimin Hong
,
Stefan Reinhard
,
Martin Wartenberg
,
Paolo Zunino
,
Andrea Manzoni
,
Francesca Ieva
,
Kuangyu Shi
.
cibcb 2023
:
1-9
[doi]
Machine Learning Reveals The Effect of Maternal Age on The Mouse Pre-Implantation Embryo Morphokinetics
Nati Daniel
,
Tanya Wasserman
,
Zohar Adler
,
Tomer Czyzewski
,
Yonatan Savir
.
cibcb 2023
:
1-8
[doi]
Human Biodata Governance: Addressing the Tension Between Innovation and Protection Through DPIAs
Esra Demir
.
cibcb 2023
:
1-7
[doi]
From Bits to Bases: Evolving a Versatile Construct for Biological Sequence and Network Data
Michael Dubé
,
James Sargant
,
Sheridan K. Houghten
,
Steffen Graether
.
cibcb 2023
:
1-9
[doi]
Comparison of Representations to Evolve Weighted Contact Networks with Epidemic Properties
Michael Dubé
,
James Sargant
,
Sheridan K. Houghten
.
cibcb 2023
:
1-8
[doi]
Quantifying Instance Hardness of Protein Folding within the HP-model
Okke Van Eck
,
Daan van den Berg
.
cibcb 2023
:
1-7
[doi]
An Explainable Deep Learning Model for Prediction of Severity of Alzheimer's Disease
Godwin Ekuma
,
Daniel B. Hier
,
Tayo Obafemi-Ajayi
.
cibcb 2023
:
1-8
[doi]
A Comparison of Machine Learning Models for Predicting CRISPR/Cas On-target Efficacy
Megan Fowler
,
Amirhossein Daneshpajouh
,
Kay C. Wiese
.
cibcb 2023
:
1-8
[doi]
Investigating Semi-Automatic Assessment of Data Sets Fairness by Means of Fuzzy Logic
Chiara Gallese
,
Teresa Scantamburlo
,
Luca Manzoni
,
Marco S. Nobile
.
cibcb 2023
:
1-10
[doi]
A Comparative Study of Machine Learning Algorithms and SIFT for Identifying the Quality of Human Induced Pluripotent Stem Cell Colony
Henry Joutsijoki
,
Markus Haponen
,
Katriina Aalto-Setälä
,
Martti Juhola
.
cibcb 2023
:
1-7
[doi]
Prediction of Phi and Psi Angle Fluctuations from Protein Sequences
Md Wasi Ul Kabir
,
Duaa Mohammad Alawad
,
Avdesh Mishra
,
Md. Tamjidul Hoque
.
cibcb 2023
:
1-6
[doi]
Enhancing Model Learning and Interpretation using Multiple Molecular Graph Representations for Compound Property and Activity Prediction
Apakorn Kengkanna
,
Masahito Ohue
.
cibcb 2023
:
1-8
[doi]
Parameter Estimation Of A Physiological Diabetes Model Using Neural Networks
Ana Moreira
,
Maren Philipps
,
Natal A. W. van Riel
.
cibcb 2023
:
1-8
[doi]
Medical and Behavioral Knowledge Discovery using Multi-Objective Analysis
Sanaz Mostaghim
,
Qihao Shan
,
Christiane Desel
,
Alexander Duscha
,
Aiden Haghikia
,
Tobias Hegelmaier
,
Felix Kuhn
,
Stefan Remy
.
cibcb 2023
:
1-8
[doi]
Bacterial phenotype prediction based on methylation site profiles
Marketa Nykrynova
,
Matej Bezdicek
,
Martina Lengerova
,
Helena Skutkova
.
cibcb 2023
:
1-6
[doi]
Trustworthy Artificial Intelligence in Medical Applications: A Mini Survey
Mohsen Abbaspour Onari
,
Isel Grau
,
Marco S. Nobile
,
Yingqian Zhang 0001
.
cibcb 2023
:
1-8
[doi]
Ensemble Learning for Medical Image Character Recognition based on Enhanced Lenet-5
Efosa Osagie
,
Wei Ji
,
Na Helian
.
cibcb 2023
:
1-8
[doi]
Evolving Dilation Functions for Parameter Estimation
Daniele M. Papetti
,
Vasco Coelho
.
cibcb 2023
:
1-8
[doi]
Estimation of Fuzzy Models from Mixed Data Sets with pyFUME
Daniele M. Papetti
,
Caro Fuchs
,
Vasco Coelho
,
Uzay Kaymak
,
Marco S. Nobile
.
cibcb 2023
:
1-8
[doi]
Towards Optimal Microbiome to Inhibit Multidrug Resistance
Nisha Pillai
,
Bindu Nanduri
,
Michael J. Rothrock
,
Zhiqian Chen
,
Mahalingam Ramkumar
.
cibcb 2023
:
1-9
[doi]
Consensus Clustering Strategy for Cell Type Assignments of scRNA-seq Data
Simone G. Riva
,
Brynelle Myers
,
Paolo Cazzaniga
,
Francesca M. Buffa
,
Andrea Tangherloni
.
cibcb 2023
:
1-8
[doi]
A Theoretical Framework for AI Models Explainability with Application in Biomedicine
Matteo Rizzo
,
Alberto Veneri
,
Andrea Albarelli
,
Claudio Lucchese
,
Marco S. Nobile
,
Cristina Conati
.
cibcb 2023
:
1-9
[doi]
Inference of threshold network models of the tryptophan operon in Escherichia coli
Gonzalo A. Ruz
.
cibcb 2023
:
1-7
[doi]
A SSIM Guided cGAN Architecture For Clinically Driven Generative Image Synthesis of Multiplexed Spatial Proteomics Channels
Jillur Rahman Saurav
,
Mohammad Sadegh Nasr 0001
,
Helen H. Shang
,
Paul Koomey
,
Michael Robben
,
Manfred Huber
,
Jon Weidanz
,
Bríd Ryan
,
Eytan Ruppin
,
Peng Jiang
,
Jacob M. Luber
.
cibcb 2023
:
1-8
[doi]
Neural Architecture Search for Genomic Sequence Data
Amadeu Scheppach
,
Hüseyin Anil Gündüz
,
Emilio Dorigatti
,
Philipp C. Münch
,
Alice C. McHardy
,
Bernd Bischl
,
Mina Rezaei
,
Martin Binder
.
cibcb 2023
:
1-10
[doi]
Word embeddings for protein sequence analysis
Ana Marta Sequeira
,
Ivan Gomes
,
Miguel Rocha 0001
.
cibcb 2023
:
1-8
[doi]
Towards EEG-based objective ADHD diagnosis support using convolutional neural networks
Simon Stock
,
Jan Hausberg
,
Alexandre Armengol-Urpi
,
Tobias Kaufmann 0001
,
Markus Schinle
,
Marius Gerdes
,
Wilhelm Stork
.
cibcb 2023
:
1-8
[doi]
Symbiotic Message Passing Model for Transfer Learning between Anti-Fungal and Anti-Bacterial Domains
Ronen Taub
,
Tanya Wasserman
,
Yonatan Savir
.
cibcb 2023
:
1-7
[doi]
Machine learning for mortality risk prediction with changing patient demographics
Richard Wainwright
,
Alex Shenfield
.
cibcb 2023
:
1-7
[doi]
2022
IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2022, Ottawa, ON, Canada, August 15-17, 2022
IEEE,
2022.
[doi]
Automated Detection of ERP artifacts of auditory oddball paradigm by Unsupervised Machine Learning Algorithm
Rafia Akhter
,
Faraz Ahmad
,
Fred R. Beyette
.
cibcb 2022
:
1-8
[doi]
geneDRAGNN: Gene Disease Prioritization using Graph Neural Networks
Awni Altabaa
,
David Huang
,
Ciaran Byles-Ho
,
Hani Khatib
,
Fabian Sosa
,
Ting Hu
.
cibcb 2022
:
1-10
[doi]
Predicting the specific substrate for transmembrane transport proteins using BERT language model
Sima Ataei
,
Gregory Butler
.
cibcb 2022
:
1-8
[doi]
Automatic Diverse Subset Selection From Enzyme Families by Solving the Maximum Diversity Problem
Christian Atallah
,
Katherine James
,
Zhen Ou
,
James Skelton
,
David Markham
,
James Finnigan
,
Simon Charnock
,
Anil Wipat
.
cibcb 2022
:
1-9
[doi]
Composite Facility Location Problems: A Case Study of Personalised Medicine
Andreea Avramescu
,
Richard Allmendinger 0001
,
Manuel López-Ibáñez 0001
,
Adriana G. Lopes
.
cibcb 2022
:
1-8
[doi]
Classification of Parkinson's Disease Patients and Effectiveness of Medication for Freezing of Gait
Omid Mohamad Beigi
,
Lígia Reis Nóbrega
,
Sheridan K. Houghten
,
Adriano de Oliveira Andrade
,
Adriano Alves Pereira
.
cibcb 2022
:
1-8
[doi]
EvoDNN - Evolving Weights, Biases, and Activation Functions in a Deep Neural Network
Peiyu Cui
,
Kay C. Wiese
.
cibcb 2022
:
1-9
[doi]
Sensitivity Analysis of Stroke Predictors Using Structural Equation Modeling and Bayesian Networks
Helder Cesar Rodigues de Oliveira
,
Svetlana N. Yanushkevich
,
Mohammed Almekhlafi
.
cibcb 2022
:
1-8
[doi]
Big Biological Data: Need for a Reorientation of the Governance Framework
Esra Demir
.
cibcb 2022
:
1-7
[doi]
Evaluation of Frameworks for Epidemic Variants and Infectivity using an Evolutionary Algorithm
Michael Dubé
,
Sheridan K. Houghten
.
cibcb 2022
:
1-9
[doi]
DeePSLiM: A Deep Learning Approach to Identify Predictive Short-linear Motifs for Protein Sequence Classification
Alexandru Filip
,
Seyedeh Shaghayegh Sadeghi
,
Alioune Ngom
,
Luis Rueda
.
cibcb 2022
:
1-8
[doi]
Identification of Synthetic Engineering in Prokaryotic Genomes Using Evolved Neural Networks
Gary B. Fogel
,
Enoch S. Liu
,
Brad Abramson
,
Semar Petrus
,
Tyler Barrus
,
Granger G. Sutton
,
Todd Michael
,
Sterling Thomas
.
cibcb 2022
:
1-8
[doi]
The Impact of Variable Selection and Transformation on the Interpretability and Accuracy of Fuzzy Models
Caro Fuchs
,
Simone Spolaor
,
Uzay Kaymak
,
Marco S. Nobile
.
cibcb 2022
:
1-8
[doi]
Compound Virtual Screening by Learning-to-Rank with Gradient Boosting Decision Tree and Enrichment-based Cumulative Gain
Kairi Furui
,
Masahito Ohue
.
cibcb 2022
:
1-7
[doi]
Predicting and Characterizing Legal Claims of Hospitals with Computational Intelligence: the Legal and Ethical Implications
Chiara Gallese
,
Caro Fuchs
,
Simone G. Riva
,
Emanuela Foglia
,
Fabrizio Schettini
,
Lucrezia Ferrario
,
Elena Falletti
,
Marco S. Nobile
.
cibcb 2022
:
1-9
[doi]
Ensemble Regression Modelling for Genetic Network Inference
Hasini Nakulugamuwa Gamage
,
Madhu Chetty
,
Adrian Shatte
,
Jennifer Hallinan
.
cibcb 2022
:
1-8
[doi]
Bleeding classification in Wireless Capsule Endoscopy Images based on Inception-ResNet-V2 and CNNs
Anass Garbaz
,
Samira Lafraxo
,
Said Charfi
,
Mohamed El Ansari
,
Lahcen Koutti
.
cibcb 2022
:
1-6
[doi]
Analysis of Microwave Scans of Cancer Patients for Classification of Treated and Untreated Tissue
Anita Garland
,
Helder Oliveira
,
Svetlana N. Yanushkevich
,
Katrin Smith
,
Jeremie Bourqui
,
Elise C. Fear
,
Sarah Quirk
,
Michael Roumeliotis
,
Petra Grendarova
,
James Pinilla
,
Mark Lesiuk
,
Alison Gourley
.
cibcb 2022
:
1-8
[doi]
TooT-BERT-M: Discriminating Membrane Proteins from Non-Membrane Proteins using a BERT Representation of Protein Primary Sequences
Hamed Ghazikhani
,
Gregory Butler
.
cibcb 2022
:
1-8
[doi]
Integrating steady-state and dynamic gene expression data for improving genetic network modelling
Jaskaran Gill
,
Madhu Chetty
,
Adrian Shatte
,
Jennifer Hallinan
.
cibcb 2022
:
1-8
[doi]
HPC enabled a Novel Deep Fuzzy Scalable Clustering Algorithm and its Application for Protein Data
Preeti Jha
,
Aruna Tiwari
,
Neha Bharill
,
Milind B. Ratnaparkhe
,
Om Prakash Patel
,
Vaibhav Anand
,
Sudhanshu Arya
,
Tanmay Singh
.
cibcb 2022
:
1-8
[doi]
Exploring Multi-Objective Deep Reinforcement Learning Methods for Drug Design
Aws Al Jumaily
,
Muhetaer Mukaidaisi
,
Andrew Vu
,
Alain Tchagang
,
Yifeng Li
.
cibcb 2022
:
1-8
[doi]
SetQuence & SetOmic: Deep Set Transformer-based Representations of Cancer Multi-Omics
Neringa Jurenaite
,
Daniel León Periñán
,
Veronika Donath
,
Sunna Torge 0001
,
René Jäkel
.
cibcb 2022
:
1-9
[doi]
Accurate Nuclei Segmentation in Breast Cancer Tumour Biopsies
Surya Kasturi
,
William T. Tran
,
Alex Shenfield
.
cibcb 2022
:
1-8
[doi]
Deep Learning and Ensemble Method for Optic Disc and Cup Segmentation
Jongwoo Kim
,
Loc Q. Tran
,
Tunde Peto
,
Emily Y. Chew
.
cibcb 2022
:
1-8
[doi]
Inference of Genetic Networks using Random Forests: A Quantitative Weighting Method for Gene Expression Data
Shuhei Kimura
,
Kazuki Sota
,
Masato Tokuhisa
.
cibcb 2022
:
1-8
[doi]
Entanglement Mapping: A Novel Method to Detect Interacting SNPs in Genome-Wide Studies
Evanjelin Mahmoodi
,
Anthony M. Musolf
,
James D. Malley
,
Daniel S. Kiser
,
Dwight Stambolian
,
Qing Li
,
Joan E. Bailey-Wilson
.
cibcb 2022
:
1-10
[doi]
Identification of the Prognostic Signatures for Isocitrate Dehydrogenase Mutant Glioma
Yasin Mamatjan
,
Mathew Voisin
,
Farshad Nassiri
,
Mira Salih
,
Fabio Y. Moraes
,
Severa Bunda
,
Risalet Tursun
,
Andreas von Deimling
,
Kenneth D. Aldape
,
Gelareh Zadeh
.
cibcb 2022
:
1-7
[doi]
Length-Based Substructure Mutation Policies for Improved RNA Design in Simulated Annealing
Ryan McBride
,
Herbert H. Tsang
.
cibcb 2022
:
1-9
[doi]
Automated Portfolio Generation for Selection Hyper-heuristics: an Application to Protein Structure Prediction on 2D HP Model
Mustafa Misir
.
cibcb 2022
:
1-8
[doi]
Comparing Interpretable AI Approaches for the Clinical Environment: an Application to COVID-19
Mohsen Abbaspour Onari
,
Marco S. Nobile
,
Isel Grau
,
Caro Fuchs
,
Yingqian Zhang
,
Arjen-Kars Boer
,
Volkher Scharnhorst
.
cibcb 2022
:
1-8
[doi]
Local Bubble Dilation Functions: Hypersphere-bounded Landscape Deformations Simplify Global Optimization
Daniele M. Papetti
,
Vasco Coelho
,
Daniel A. Ashlock
,
Paolo Cazzaniga
,
Simone Spolaor
,
Daniela Besozzi
,
Marco S. Nobile
.
cibcb 2022
:
1-8
[doi]
A Deep Learning Pipeline for the Automatic cell type Assignment of scRNA-seq Data
Simone G. Riva
,
Brynelle Myers
,
Paolo Cazzaniga
,
Andrea Tangherloni
.
cibcb 2022
:
1-8
[doi]
Learning binary threshold networks for gene regulatory network modeling
Gonzalo A. Ruz
,
Eric Goles 0001
.
cibcb 2022
:
1-8
[doi]
DDIPred: Graph Convolutional Network-Based Drug-drug Interactions Prediction Using Drug Chemical Structure Embedding
Seyedeh Shaghayegh Sadeghi
,
Alioune Ngom
.
cibcb 2022
:
1-6
[doi]
Evolving Lockdown Strategies to Minimize Infections in an Epidemic
James Sargant
,
Michael Dubé
,
Sheridan K. Houghten
.
cibcb 2022
:
1-8
[doi]
Prioritizing Variants using Rough-set based Relevance Algorithm for GWAS
Jyoti Sharma
,
Khadija Sana Hafeez
,
Sushmita Paul
.
cibcb 2022
:
1-8
[doi]
Multi-objective Optimization for Marker Panel Identification in Single-cell Data
Andrea Tangherloni
,
Simone G. Riva
,
Brynelle Myers
,
Paolo Cazzaniga
.
cibcb 2022
:
1-8
[doi]
Towards a Classification Scheme for Inferring the Atomic Composition of Drug-like Molecules from their Quantum Derived Electronic Properties
Alain B. Tchagang
,
Julio J. Valdés
.
cibcb 2022
:
1-5
[doi]
Fast Data Driven Estimation of Cluster Number in Multiplex Images using Embedded Density Outliers
Spencer Angus Thomas
.
cibcb 2022
:
1-8
[doi]
Handling Sparse Longitudinal Data with Irregular Missing Data - Analysis of Fecal Coliform Bacteria Data
Shuai You
,
Xiaolin Huang
,
Li Xing
,
Youlian Pan
,
Xuekui Zhang
.
cibcb 2022
:
1-6
[doi]
Assessment of the Relationship Between Physical Behaviours, Psychological Factors, Medication Use, Body Composition and Weight Regain Following Bariatric Surgery
Fatemeh ZareMehrjardi
,
Ryan E. R. Reid
,
Ross E. Andersen
,
James Alexander Hughes
.
cibcb 2022
:
1-11
[doi]
Non-Invasive Blood Pressure Measurement Using A Mobile Phone Camera
Yuxuan Zhang
,
Xiao Zhang
,
Jinlian Du
.
cibcb 2022
:
1-6
[doi]
2021
A Comparison of Novel Representations for Evolving Epidemic Networks
Daniel A. Ashlock
,
Michael Dubé
.
cibcb 2021
:
1-8
[doi]
Ring Optimization of Epidemic Contact Networks
Daniel A. Ashlock
,
Joseph Alexander Brown
,
Wendy Ashlock
,
Michael Dubé
.
cibcb 2021
:
1-8
[doi]
One Moose, Two Moose, Three Fields, More?
Daniel A. Ashlock
,
Joseph Alexander Brown
,
Sheridan K. Houghten
,
Munir Makhmutov
.
cibcb 2021
:
1-7
[doi]
DeepGREP: A deep convolutional neural network for predicting gene-regulating effects of small molecules
Benan Bardak
,
Mehmet Tan
.
cibcb 2021
:
1-8
[doi]
Using Clinical Drug Representations for Improving Mortality and Length of Stay Predictions
Batuhan Bardak
,
Mehmet Tan
.
cibcb 2021
:
1-8
[doi]
Genome-scale prediction of bacterial promoters
Miria Bernardino
,
Robert Beiko
.
cibcb 2021
:
1-8
[doi]
Human Activity Recognition Using Convolutional Neural Networks
Gülüstan Dogan
,
Sinem Sena Ertas
,
Iremnaz Cay
.
cibcb 2021
:
1-5
[doi]
Efficacy and accuracy responses of DNA mini-barcodes in species identification under a supervised machine learning approach
Mohimenul Karim
,
Rashid Abid
.
cibcb 2021
:
1-9
[doi]
Retinal Disease Classification from OCT Images Using Deep Learning Algorithms
Jongwoo Kim
,
Loc Q. Tran
.
cibcb 2021
:
1-6
[doi]
Quantitative Estimate of Protein-Protein Interaction Targeting Drug-likeness
Takatsugi Kosugi
,
Masahito Ohue
.
cibcb 2021
:
1-8
[doi]
Using Evolved Neural Networks to Elucidate Nef Features Associated with HIV-1 Subtype Differentiation
Enoch S. Liu
,
Gary B. Fogel
,
David J. Nolan
,
Susanna L. Lamers
,
Michael S. McGrath
.
cibcb 2021
:
1-8
[doi]
Random Forest to Predict Eucalyptus as a Potential Herb in Preventing Covid19
Nabila Sekar Ramadhanti
,
Wisnu Ananta Kusuma
,
Irmanida Batubara
,
Rudi Heryanto
.
cibcb 2021
:
1-5
[doi]
Classification of Human Emotions using EEG-based Causal Connectivity Patterns
J. Siva Ramakrishna
,
Neelam Sinha
,
Hariharan Ramasangu
.
cibcb 2021
:
1-8
[doi]
Drug-target affinity prediction using applicability domain based on data density
Shunya Sugita
,
Masahito Ohue
.
cibcb 2021
:
1-6
[doi]
Predicting Drug-Drug Interactions Using Meta-path Based Similarities
Farhan Tanvir
,
Muhammad Ifte Islam
,
Esra Akbas
.
cibcb 2021
:
1-8
[doi]
Modelling The Fitness Landscapes of a SCRaMbLEd Yeast Genome
Bill Yang
,
Goksel Misirli
,
Anil Wipat
,
Jennifer Hallinan
.
cibcb 2021
:
1-9
[doi]
Discovering Missing Edges in Drug-Protein Networks: Repurposing Drugs for SARS-CoV-2
Fatemeh ZareMehrjardi
,
Athar Omidi
,
Cristina Sciortino
,
Ryan E. R. Reid
,
Ryan Lukeman
,
James Alexander Hughes
,
Othman Soufan
.
cibcb 2021
:
1-10
[doi]
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