Granger G. Sutton - researchr alias

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Viewing Publication 1 - 25 from 25

2022

Identification of Synthetic Engineering in Prokaryotic Genomes Using Evolved Neural NetworksGary B. Fogel, Enoch S. Liu, Brad Abramson, Semar Petrus, Tyler Barrus, Granger G. Sutton, Todd Michael, Sterling Thomas. cibcb 2022: 1-8 [doi]

2019

Large-scale comparative analysis of microbial pan-genomes using PanOCTJason M. Inman, Granger G. Sutton, Erin Beck, Lauren M. Brinkac, Thomas H. Clarke, Derrick E. Fouts. bioinformatics, 35(6):1049-1050, 2019. [doi]

InterPro in 2019: improving coverage, classification and access to protein sequence annotationsAlex L. Mitchell, Teresa K. Attwood, Patricia C. Babbitt, Matthias Blum, Peer Bork, Alan Bridge, Shoshana D. Brown, Hsin-Yu Chang, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Hongzhan Huang, Ivica Letunic, Rodrigo Lopez, Aurelien Luciani, Fábio Madeira, Aron Marchler-Bauer, Huaiyu Mi, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Arun P. Pandurangan, Typhaine Paysan-Lafosse, Sebastien Pesseat, Simon C. Potter, Matloob Qureshi, Neil D. Rawlings, Nicole Redaschi, Lorna Richardson, Catherine Rivoire, Gustavo A. Salazar, Amaia Sangrador-Vegas, Christian J. A. Sigrist, Ian Sillitoe, Granger G. Sutton, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Siew-Yit Yong, Robert D. Finn. nar, 47(Database-Issue), 2019. [doi]

Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributesLorna Richardson, Neil D. Rawlings, Gustavo A. Salazar, Alexandre Almeida, David Haft, Gregory Ducq, Granger G. Sutton, Robert D. Finn. nar, 47(Database-Issue), 2019. [doi]

2018

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture modelsThomas H. Clarke, Lauren M. Brinkac, Granger G. Sutton, Derrick E. Fouts. bioinformatics, 34(17):3032-3034, 2018. [doi]

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomesThomas H. Clarke, Lauren M. Brinkac, Jason M. Inman, Granger G. Sutton, Derrick E. Fouts. bmcbi, 19(1), 2018. [doi]

2017

LOCUST: a custom sequence locus typer for classifying microbial isolatesLauren M. Brinkac, Erin Beck, Jason M. Inman, Pratap Venepally, Derrick E. Fouts, Granger G. Sutton. bioinformatics, 33(11):1725-1726, 2017. [doi]

InterPro in 2017 - beyond protein family and domain annotationsRobert D. Finn, Teresa K. Attwood, Patricia C. Babbitt, Alex Bateman, Peer Bork, Alan Bridge, Hsin-Yu Chang, Zsuzsanna Dosztányi, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Gemma L. Holliday, Hongzhan Huang, Xiaosong Huang, Ivica Letunic, Rodrigo Lopez, Shennan Lu, Aron Marchler-Bauer, Huaiyu Mi, Jaina Mistry, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Youngmi Park, Sebastien Pesseat, Damiano Piovesan, Simon C. Potter, Neil D. Rawlings, Nicole Redaschi, Lorna Richardson, Catherine Rivoire, Amaia Sangrador-Vegas, Christian J. A. Sigrist, Ian Sillitoe, Ben Smithers, Silvano Squizzato, Granger G. Sutton, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Cathy H. Wu, Ioannis Xenarios, Lai-Su L. Yeh, Siew-Yit Yong, Alex L. Mitchell. nar, 45(Database-Issue), 2017. [doi]

2012

CharProtDB: a database of experimentally characterized protein annotationsRamana Madupu, Alexander R. Richter, Robert J. Dodson, Lauren M. Brinkac, Derek M. Harkins, A. Scott Durkin, Susmita Shrivastava, Granger G. Sutton, Daniel H. Haft. nar, 40(Database-Issue):237-241, 2012. [doi]

2010

The comprehensive microbial resourceTanja Davidsen, Erin Beck, Anuradha Ganapathy, Robert Montgomery, Nikhat Zafar, Qi Yang, Ramana Madupu, Phil Goetz, Kevin Galinsky, Owen White, Granger G. Sutton. nar, 38(Database-Issue):340-345, 2010. [doi]

The Protein Naming Utility: a rules database for protein nomenclatureJohannes Goll, Robert Montgomery, Lauren M. Brinkac, Seth Schobel, Derek M. Harkins, Yinong Sebastian, Susmita Shrivastava, A. Scott Durkin, Granger G. Sutton. nar, 38(Database-Issue):336-339, 2010. [doi]

An algorithm for automated closure during assemblySergey Koren, Jason R. Miller, Brian Walenz, Granger G. Sutton. bmcbi, 11:457, 2010. [doi]

2008

Session IntroductionFrancisco M. de la Vega, Gabor T. Marth, Granger G. Sutton. psb 2008: 87-89 [doi]

Consensus generation and variant detection by Celera AssemblerGennady Denisov, Brian Walenz, Aaron L. Halpern, Jason Miller, Nelson Axelrod, Samuel Levy, Granger G. Sutton. bioinformatics, 24(8):1035-1040, 2008. [doi]

Toward Computer-Assisted Text Curation: Classification Is Easy (Choosing Training Data Can Be Hard...)Robert Denroche, Ramana Madupu, Shibu Yooseph, Granger G. Sutton, Hagit Shatkay. ismb 2010: 33-42 [doi]

Aggressive assembly of pyrosequencing reads with matesJason R. Miller, Arthur L. Delcher, Sergey Koren, Eli Venter, Brian Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark M. Mobarry, Granger G. Sutton. bioinformatics, 24(24):2818-2824, 2008. [doi]

Gene identification and protein classification in microbial metagenomic sequence data via incremental clusteringShibu Yooseph, Weizhong Li, Granger G. Sutton. bmcbi, 9, 2008. [doi]

Assembly reconciliationAleksey V. Zimin, Douglas R. Smith, Granger G. Sutton, James A. Yorke. bioinformatics, 24(1):42-45, 2008. [doi]

2007

Assembling millions of short DNA sequences using SSAKERené L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt. bioinformatics, 23(4):500-501, 2007. [doi]

2005

A Tool for Analyzing Mate Pairs in Assemblies (TAMPA)Ian M. Dew, Brian Walenz, Granger G. Sutton. jcb, 12(5):497-513, 2005. [doi]

2004

ThurGood: Evaluating Assembly-to-Assembly MappingHagit Shatkay, Jason Miller, Clark M. Mobarry, Michael Flanigan, Shibu Yooseph, Granger G. Sutton. jcb, 11(5):800-811, 2004. [doi]

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Publications by 'Granger G. Sutton'

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2022

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2018

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2010

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2005

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2001

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