Shibu Yooseph - researchr alias

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Viewing Publication 1 - 34 from 34

2022

Variational Approximation-Based Model Selection for Microbial Network InferenceShibu Yooseph, Sahar Tavakoli. jcb, 29(7):724-737, 2022. [doi]

2019

2017

GRASP2: Fast and memory-efficient gene-centric assembly and homolog searchCuncong Zhong, Youngik Yang, Shibu Yooseph. iccabs 2017: 1 [doi]

2016

GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assemblyCuncong Zhong, Youngik Yang, Shibu Yooseph. bmcbi, 17(S-8):283, 2016. [doi]

Metagenome and Metatranscriptome Analyses Using Protein Family ProfilesCuncong Zhong, Anna Edlund, Youngik Yang, Jeffrey S. McLean, Shibu Yooseph. ploscb, 12(7), 2016. [doi]

2015

SFA-SPA: a suffix array based short peptide assembler for metagenomic dataYoungik Yang, Cuncong Zhong, Shibu Yooseph. bioinformatics, 31(11):1833-1835, 2015. [doi]

2013

Large memory high performance computing enables comparison across human gut microbiome of patients with autoimmune diseases and healthy subjectsSitao Wu, Weizhong Li, Larry Smarr, Karen Nelson, Shibu Yooseph, Manolito Torralba. xsede 2013: 25 [doi]

2010

METAREP: JCVI metagenomics reports - an open source tool for high-performance comparative metagenomicsJohannes Goll, Douglas B. Rusch, David M. Tanenbaum, Mathangi Thiagarajan, Kelvin Li, Barbara A. Methé, Shibu Yooseph. bioinformatics, 26(20):2631-2632, 2010. [doi]

2008

Toward Computer-Assisted Text Curation: Classification Is Easy (Choosing Training Data Can Be Hard...)Robert Denroche, Ramana Madupu, Shibu Yooseph, Granger G. Sutton, Hagit Shatkay. ismb 2010: 33-42 [doi]

Gene identification and protein classification in microbial metagenomic sequence data via incremental clusteringShibu Yooseph, Weizhong Li, Granger G. Sutton. bmcbi, 9, 2008. [doi]

2004

A Note on Efficient Computation of Haplotypes via Perfect PhylogenyVineet Bafna, Dan Gusfield, Sridhar Hannenhalli, Shibu Yooseph. jcb, 11(5):858-866, 2004. [doi]

ThurGood: Evaluating Assembly-to-Assembly MappingHagit Shatkay, Jason Miller, Clark M. Mobarry, Michael Flanigan, Shibu Yooseph, Granger G. Sutton. jcb, 11(5):800-811, 2004. [doi]

2003

Haplotyping as Perfect Phylogeny: A Direct ApproachVineet Bafna, Dan Gusfield, Giuseppe Lancia, Shibu Yooseph. jcb, 10(3/4):323-340, 2003. [doi]

Combinatorial Problems Arising in SNP and Haplotype AnalysisBjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail. dmtcs 2003: 26-47 [doi]

2002

2001

1999

1998

1997

Unifying Themes for Selection on Any NetworkSanguthevar Rajasekaran, Wang Chen, Shibu Yooseph. jpdc, 46(1):105-111, 1997.

1996

Constructing Evolutionary Trees in the Presence of Polymorphic CharactersMaria Luisa Bonet, Cynthia A. Phillips, Tandy Warnow, Shibu Yooseph. stoc 1996: 220-229 [doi]

Inferring evolutionary trees from polymorphic characters, and an analysis of the Indo-European family of languagesMaria Luisa Bonet, Cynthia A. Phillips, Tandy J. Warnow, Shibu Yooseph. dimacs 1997: 43-56

1995

Computing the Local Consensus of TreesSampath Kannan, Tandy Warnow, Shibu Yooseph. soda 1995: 68-77

1994

Unifying Themes for Network SelectionSanguthevar Rajasekaran, Wang Chen, Shibu Yooseph. isaac 1994: 92-100

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