Abstract is missing.
- Challenges of biomolecular structure prediction (abstract)Ruben Abagyan. 1 [doi]
- Detecting non-adjoining correlations with signals in DNAPankaj Agarwal, Vineet Bafna. 2-8 [doi]
- From four-taxon trees to phylogenies (preliminary report): the case of mammalian evolutionAmir Ben-Dor, Benny Chor, Dan Graur, Ron Ophir, Dan Pelleg. 9-19 [doi]
- An algorithm for finding tandem repeats of unspecified pattern sizeGary Benson. 20-29 [doi]
- Protein folding in the hydrophobic-hydrophilic (::::HP::::) is NP-completeBonnie Berger, Frank Thomson Leighton. 30-39 [doi]
- Better methods for solving parsimony and compatibilityMaria Luisa Bonet, Mike A. Steel, Tandy Warnow, Shibu Yooseph. 40-49 [doi]
- Enhancements in sequence analysis with DNA arrays (abstract)Charles R. Cantor. 50 [doi]
- On the complexity of protein folding (abstract)Pierluigi Crescenzi, Deborah Goldman, Christos H. Papadimitriou, Antonio Piccolboni, Mihalis Yannakakis. 61-62 [doi]
- Constructing maps using the span and inclusion relationsDaniel P. Fasulo, Tao Jiang, Richard M. Karp, Nitin Sharma. 64-73 [doi]
- How fast a protein chain can fold to its most stable structure?Alexei V. Finkelstein, Azat Ya. Badretdinov. 74-78 [doi]
- Algorithmic determination of core positions in the ::::V::L:::::: and ::::V::H:::::: domains of immunoglobulin moleculesIsrael Gelfand, Alexander Kister, Casimir A. Kulikowski, Ognyan Stoyanov. 85-93 [doi]
- Family-based homology detection via pairwise sequence comparisonWilliam Noble Grundy. 94-100 [doi]
- Dynamic programming alignment accuracyIan Holmes, Richard Durbin. 102-108 [doi]
- Optimal detection of sequence similarity by local alignmentTerence Hwa, Michael Lässig. 109-116 [doi]
- Algorithms for optical mappingRichard M. Karp, Ron Shamir. 117-124 [doi]
- The ordinal quartet methodPaul E. Kearney. 125-134 [doi]
- Genome analysis using clusters of orthologous groups (COGs)Eugene V. Koonin, Roman L. Tatusov, Michael Y. Galperin, Michael N. Rosanov. 135-139 [doi]
- Beyond mutation matrices: physical-chemistry based evolutionary modelsJeffrey M. Koshi, David P. Mindell, Richard A. Goldstein. 140-145 [doi]
- Estimation for restriction sites observed by optical mapping using reversible-jump Markov chain Monte CarloJae Kyu Lee, Vlado Dancík, Michael S. Waterman. 147-152 [doi]
- A polyhedral approach to RNA sequence structure alignmentHans-Peter Lenhof, Knut Reinert, Martin Vingron. 153-162 [doi]
- Assessment of ab initio protein structure predictionArthur M. Lesk. 163-171 [doi]
- Bridging the gap between sequence and structure (abstract)M. Levitt. 172 [doi]
- A structure based similarity measure for nucleic acid sequence comparisonRongxiang Liu, Thomas W. Blackwell, David J. States. 173-181 [doi]
- On reconstructing species trees from gene trees in term of duplications and lossesBin Ma, Ming Li, Louxin Zhang. 182-191 [doi]
- Partitioning ::::K:::: clones: hardness results and practical algorithms for the ::::K-populations problem::::Laxmi Parida, Bud Mishra. 192-201 [doi]
- Estimation of allele frequencies from color-multiplexed electropherogramsDavid G. Politte, David R. Maffitt, David J. States. 202-206 [doi]
- A unified approach to word statisticsMireille Régnier. 207-213 [doi]
- A self-consistent field optimization approach to build energetically and geometrically correct lattice models of proteinsBoris A. Reva, Alexei V. Finkelstein, Jeffrey Skolnick. 214-220 [doi]
- Motif discovery without alignment or enumeration (extended abstract)Isidore Rigoutsos, Aris Floratos. 221-227 [doi]
- An algorithm for finding novel gapped motifs in DNA sequencesEmily Rocke, Martin Tompa. 228-233 [doi]
- Identifying satellites in nucleic acid sequencesMarie-France Sagot, Eugene W. Myers. 234-242 [doi]
- Multiple genome rearrangementsDavid Sankoff, Mathieu Blanchette. 243-247 [doi]
- New approaches to genomic analysis using single moleculesDavid C. Schwartz, Thomas S. Anantharaman, C. Aston, Bud Mishra, V. Clarke, D. Gebauer, S. Delobette, E. Dimalanta, J. Edington, J. Evenzehav, J. Giacalone, C. Hiort, E. Huff, J. Jing, Z. Lai, E. Lee, J. Lin, B. Porter, R. Qi, Y. Skiadis. 248-250 [doi]
- Modeling DNA shufflingFengzhu Sun. 251-257 [doi]
- Analysis of the position dependent amino acid probabilities and its application to the search for remote homologuesShamil R. Sunyaev, Igor V. Rodchenkov, Frank Eisenhaber, Eugene N. Kuznetsov. 258-265 [doi]
- The theoretical limits of DNA sequence discrimination of polyamidesWynn L. Walker, David S. Goodsell, Elliot M. Landaw. 270-275 [doi]
- Regression analysis of multiple protein structuresThomas D. Wu, Trevor Hastie, Scott C. Schmidler, Douglas L. Brutlag. 276-284 [doi]
- Alignments without low-scoring regionsZheng Zhang 0004, Piotr Berman, Webb Miller. 294-301 [doi]