David J. States - researchr alias

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Viewing Publication 1 - 41 from 41

2014

2012

Metab2MeSH: annotating compounds with medical subject headingsMaureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn, Brian D. Athey, Alla Karnovsky. bioinformatics, 28(10):1408-1410, 2012. [doi]

2010

Understanding Distal transcriptional Regulation from Sequence, Expression and interactome PerspectivesArvind Rao, David J. States, Alfred O. Hero III, James Douglas Engel. jbcb, 8(2):219-246, 2010. [doi]

GLay: community structure analysis of biological networksGang Su, Allan Kuchinsky, John H. Morris, David J. States, Fan Meng. bioinformatics, 26(24):3135-3137, 2010. [doi]

2009

Integrating and annotating the interactome using the MiMI plugin for cytoscapeJing Gao, Alex S. Ade, V. Glenn Tarcea, Terry E. Weymouth, Barbara R. Mirel, H. V. Jagadish, David J. States. bioinformatics, 25(1):137-138, 2009. [doi]

SciMiner: web-based literature mining tool for target identification and functional enrichment analysisJunguk Hur, Adam D. Schuyler, David J. States, Eva L. Feldman. bioinformatics, 25(6):838-840, 2009. [doi]

MiSearch adaptive pubMed search toolDavid J. States, Alex S. Ade, Zachary C. Wright, Aaron V. Bookvich, Brian Athey. bioinformatics, 25(7):974-976, 2009. [doi]

2008

2007

MYC Recognition Site Binding and FunctionYili Chen, Thomas W. Blackwell, Ji Chen, Jing Gao, Angel W. Lee, David J. States. ploscb, 3(4), 2007. [doi]

Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle togetherMagesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian D. Athey, David J. States, H. V. Jagadish. nar, 35(Database-Issue):566-571, 2007. [doi]

Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed InformationArvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel. ejbsb, 2007, 2007. [doi]

Inferring Time-Varying Network Topologies from Gene Expression DataArvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel. ejbsb, 2007, 2007. [doi]

SAGA: a subgraph matching tool for biological graphsYuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel. bioinformatics, 23(2):232-239, 2007. [doi]

2006

Probabilistic data integration and visualization for understanding transcriptional regulationArvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel. eusipco 2006: 1-5 [doi]

Inference of Biologically Relevant Gene Influence Networks Using the Directed Information CriterionArvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel. icassp 2006: 1028-1031 [doi]

2005

ISMB 2005 OrganizationH. V. Jagadish, David J. States, Burkhard Rost. ismb 2005: 3-6 [doi]

ISMB 2005H. V. Jagadish, David J. States, Burkhard Rost. ismb 2005: 1-2 [doi]

Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extractionCarlos Santos, Daniela Eggle, David J. States. bioinformatics, 21(8):1653-1658, 2005. [doi]

2001

Conformational model for binding site recognition by the E.coli MetJ transcription factorRongxiang Liu, Thomas W. Blackwell, David J. States. bioinformatics, 17(7):622-633, 2001.

Probabilistic approaches to the use of higher order clone relationships in physical map assemblyDavid J. States, Volker Nowotny, Thomas W. Blackwell. ismb 2001: 262-269

Time to defend what we have wonDavid J. States. bioinformatics, 17(4):299, 2001.

2000

UTR Reconstruction and Analysis Using Genomically Aligned EST SequencesZhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States. ismb 2000: 218-227

1999

Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism DistributionsThomas W. Blackwell, Eric C. Rouchka, David J. States. ismb 1999: 54-59

1998

1996

A Bayesian Evolutionary Distance for Parametrically Aligned SequencesPankaj Agarwal, David J. States. jcb, 3(1):1-18, 1996.

Compact Encoding Strategies for DNA Sequence Similarity SearchDavid J. States, Pankaj Agarwal. ismb 1996: 211-217

1994

The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans GenomePankaj Agarwal, David J. States. ismb 1994: 1-9

Motifs in Biology: Analysis of Ambiguous Data: IntroductionToni Kazic, David J. States, Lloyd Allison. hicss 1994: 224

QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region IdentificationDavid J. States, Warren Gish. jcb, 1(1):39-50, 1994. [doi]

1993

Information Enhancement Methods for Large Scale Sequence AnalysisJean-Michel Claverie, David J. States. CANDC, 17(2):191-201, 1993. [doi]

Computationally Efficient Cluster Representation in Molecular Sequence MegaclassificationDavid J. States, Nomi L. Harris, Lawrence Hunter. ismb 1993: 387-394

1992

Mega-Classification: Discovering Motifs in Massive DatastreamsNomi L. Harris, Lawrence Hunter, David J. States. AAAI 1992: 837-842

Efficient Classification of Massive, Unsegmented DatastreamsLawrence Hunter, Nomi L. Harris, David J. States. icml 1992: 224-232

Bayesian Classification of Protein StructureLawrence Hunter, David J. States. expert, 7(4):67-75, 1992. [doi]

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