Abstract is missing.
- The Conserved Exon Method for Gene FindingVineet Bafna, Daniel H. Huson. 3-12
- Reducing Mass Degeneracy in SAR by MS by Stable Isotopic LabelingChristopher Bailey-Kellogg, John J. Kelley, Clifford Stein, Bruce Randall Donald. 13-24
- Matching Protein b-Sheet Partners by Feedforward and Recurrent Neural NetworksPierre Baldi, Gianluca Pollastri, Claus A. F. Andersen, Søren Brunak. 25-36
- An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple SpeciesMathieu Blanchette, Benno Schwikowski, Martin Tompa. 37-45
- Robust Parametric and Semi-Parametric Spot Fitting for Spot Array ImagesNorbert Brändle, Horng-Yang Chen, Horst Bischof, Hilmar Lapp. 46-56
- Small Subunit Ribosomal RNA Modeling Using Stochastic Context-Free GrammarsMichael P. S. Brown. 57-66
- Regulatory Element Detection Using a Probabilistic Segmentation ModelHarmen J. Bussemaker, Hao Li, Eric D. Siggia. 67-74
- Analysis of Gene Expression Microarrays for Phenotype ClassificationAndrea Califano, Gustavo Stolovitzky, Yuhai Tu. 75-85
- Efficient Attractor Analysis Based on Self-Dependent Subsets of Elements An Application to Signal Transduction StudiesMaura Cárdenas-García, Jaime Lagunez-Otero, Nikolai A. Korneev. 86-92
- Biclustering of Expression DataYizong Cheng, George M. Church. 93-103
- A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic DataMary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy Warnow, Stacia K. Wyman. 104-115
- A Probabilistic Learning Approach to Whole-Genome Operon PredictionMark Craven, David Page, Jude W. Shavlik, Joseph Bockhorst, Jeremy D. Glasner. 116-127
- Accelerating Protein Classification Using Suffix TreesBogdan Dorohonceanu, Craig G. Nevill-Manning. 128-133
- Protein Family Classification Using Sparse Markov TransducersEleazar Eskin, William Noble Grundy, Yoram Singer. 134-145
- Prediction of the Number of Residue Contacts in ProteinsPiero Fariselli, Rita Casadio. 146-151
- Integrative Analysis of Protein Interaction DataMatthias Fellenberg, Kaj Albermann, Alfred Zollner, Hans-Werner Mewes, Jean Hani. 152-161
- Glimmers in the Midnight Zone: Characterization of Aligned Identical Residues in Sequence-Dissimilar Proteins Sharing a Common FoldIddo Friedberg, Tommy Kaplan, Hanah Margalit. 162-170
- Intelligent Aids for Parallel Experiment Planning and Macromolecular CrystallizationVanathi Gopalakrishnan, Bruce G. Buchanan, John M. Rosenberg. 171-182
- A Practical Algorithm for Optimal Inference of Haplotypes from Diploid PopulationsDan Gusfield. 183-189
- Analysis of Yeast s ORF Upstream Regions by Parallel Processing, Microarrays, and Computational MethodsSteven Hampson, Pierre Baldi, Dennis F. Kibler, Suzanne B. Sandmeyer. 190-201
- Finding Regulatory Elements Using Joint Likelihoods for Sequence and Expression Profile DataIan Holmes, William J. Bruno. 202-210
- Search for a New Description of Protein Topology and Local StructureLukasz Jaroszewski, Adam Godzik. 211-217
- UTR Reconstruction and Analysis Using Genomically Aligned EST SequencesZhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States. 218-227
- Computation and Visualization of Degenerate Repeats in Complete GenomesStefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich. 228-238
- An Evaluation of Ontology Exchange Languages for BioinformaticsRobin McEntire, Peter D. Karp, Neil F. Abernethy, David Benton, Gregg Helt, Matt DeJongh, Robert Kent, Anthony Kosky, Suzanna Lewis, Dan Hodnett, Eric P. Neumann, Frank Olken, Dhiraj K. Pathak, Peter Tarczy-Hornoch, Luca Toldo, Thodoros Topaloglou. 239-250
- Towards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated Analysis of Fluorescence Microscope ImagesRobert F. Murphy, Michael V. Boland, Meel Velliste. 251-259
- Spectrum Alignment: Efficient Resequencing by HybridizationItsik Pe er, Ron Shamir. 260-268
- Combinatorial Approaches to Finding Subtle Signals in DNA SequencesPavel A. Pevzner, Sing-Hoi Sze. 269-278
- A Pragmatic Information Extraction Strategy for Gathering Data on Genetic InteractionsDenys Proux, François Rechenmann, Laurent Julliard. 279-285
- Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis StrainsSoumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu, Peter M. Small, Russ B. Altman. 286-295
- Genomic Fold Assignment and Rational Modeling of Proteins of Biological InterestJ. Michael Sauder, Roland L. Dunbrack Jr.. 296-306
- Center CLICK: A Clustering Algorithm with Applications to Gene Expression AnalysisRoded Sharan, Ron Shamir. 307-316
- Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene AnalysisHagit Shatkay, Stephen Edwards, W. John Wilbur, Mark Boguski. 317-328
- Alignment of Flexible Protein StructuresMaxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson. 329-343
- A Statistical Method for Finding Transcription Factor Binding SitesSaurabh Sinha, Martin Tompa. 344-354
- Linear Modeling of Genetic Networks from Experimental DataEugene P. van Someren, Lodewyk F. A. Wessels, Marcel J. T. Reinders. 355-366
- Sequence Database Search Using Jumping AlignmentsRainer Spang, Marc Rehmsmeier, Jens Stoye. 367-375
- A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme HierarchyYukako Tohsato, Hideo Matsuda, Akihiro Hashimoto. 376-383
- Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression DataJaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen. 384-394
- Towards a Complete Map of the Protein Space Based on a Unified Sequence and Structure Analysis of All Known ProteinsGolan Yona, Michael Levitt. 395-417
- Analysis of Gene Expression Data with Pathway ScoresAlexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer. 407-417