Michael Gribskov - researchr alias

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Viewing Publication 1 - 43 from 43

2022

Bibliometric review of ATAC-Seq and its application in gene expressionLiheng Luo, Michael Gribskov, Sufang Wang. bib, 23(3), 2022. [doi]

2020

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seqXiangying Sun, Zhezhen Wang, Johnathon M. Hall, Carlos Perez-Cervantes, Alexander J. Ruthenburg, Ivan P. Moskowitz, Michael Gribskov, Xinan H. Yang. ploscb, 16(2), 2020. [doi]

2019

IRESpy: an XGBoost model for prediction of internal ribosome entry sitesJunhui Wang, Michael Gribskov. bmcbi, 20(1), 2019. [doi]

MiPepid: MicroPeptide identification tool using machine learningMengmeng Zhu, Michael Gribskov. bmcbi, 20(1), 2019. [doi]

2018

COACT: a query interface language for collaborative databasesKhaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov, Walid G. Aref, Deo Prakash. dpd, 36(1):121-151, 2018. [doi]

AUDIT: approving and tracking updates with dependencies in collaborative databasesKhaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov, Walid G. Aref. dpd, 36(1):81-119, 2018. [doi]

2017

2016

CellMiner Companion: an interactive web application to explore CellMiner NCI-60 dataSufang Wang, Michael Gribskov, Tony R. Hazbun, Pete E. Pascuzzi. bioinformatics, 32(15):2399-2401, 2016. [doi]

2015

Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)Gladys K. Andino, Michael Gribskov, Greg J. Hunt, Denis Anderson, Jay D. Evans. bibm 2015: 1715-1716 [doi]

Differential flux balance analysis of quantitative proteomic data on protein interaction networksBiaobin Jiang, David F. Gleich, Michael Gribskov. globalsip 2015: 977-981 [doi]

MMC-margin: Identification of maximum frequent subgraphs by metropolis Monte Carlo samplingMuyi Liu, Michael Gribskov. bigdataconf 2015: 849-856 [doi]

2008

Pattern Matching in RNA StructuresKejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov. isbra 2008: 317-330 [doi]

Bioinformatics research in the Asia Pacific: a 2007 updateShoba Ranganathan, Michael Gribskov, Tin Wee Tan. bmcbi, 9(S-1), 2008. [doi]

2006

Wiggle - Predicting Functionally Flexible Regions from Primary SequenceJenny Gu, Michael Gribskov, Philip E. Bourne. ploscb, 2(7), 2006. [doi]

Establishing bioinformatics research in the Asia PacificShoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan. bmcbi, 7(S-5), 2006. [doi]

2005

The ISCB: Growing and Evolving in Step with ScienceMichael Gribskov. ploscb, 1(5), 2005. [doi]

An Open Forum for Computational BiologyMichael Gribskov. ploscb, 1(1), 2005. [doi]

2004

A Database Designed to Computationally Aid an Experimental Approach to Alternative SplicingChristina L. Zheng, T. Murlidharan Nair, Michael Gribskov, Y. S. Kwon, Hai-Ri Li, Xiang-Dong Fu. psb 2004: 78-88 [doi]

2003

Estimating and Evaluating the Statistics of Gapped Local-Alignment ScoresTimothy L. Bailey, Michael Gribskov. jcb, 9(3):575-596, 2003.

2HAPI: A Microarray Data Analysis SystemJ. Lynn Fink, Scott Drewes, Hiren Patel, John B. Welsh, Daniel R. Masys, Jacques Corbeil, Michael Gribskov. bioinformatics, 19(11):1443-1445, 2003.

Challenges in Data Management for Functional GenomicsMichael Gribskov. omics, 7(1):3-6, 2003. [doi]

Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression dataT. Murlidharan Nair, Christina L. Zheng, J. Lynn Fink, Robert O. Stuart, Michael Gribskov. CANDC, 27(6):565-574, 2003. [doi]

The PlantsP and PlantsT Functional Genomics DatabasesJason H. Tchieu, Fariba Fana, J. Lynn Fink, Jeffrey Harper, T. Murlidharan Nair, R. Hannes Niedner, Douglas W. Smith, Kenneth Steube, Tobey M. Tam, Stella Veretnik, Degeng Wang, Michael Gribskov. nar, 31(1):342-344, 2003.

a program for automatic generation of database interfaces Christina L. Zheng, Fariba Fana, Poornaprajna V. Udupi, Michael Gribskov. CANDC, 27(2):135-139, 2003. [doi]

2002

Homophila: human disease gene cognates in DrosophilaSamson Chien, Lawrence T. Reiter, Ethan Bier, Michael Gribskov. nar, 30(1):149-151, 2002.

2001

PlantsP: a functional genomics database for plant phosphorylationMichael Gribskov, Fariba Fana, Jeffrey Harper, Debra A. Hope, Alice C. Harmon, Douglas W. Smith, Frans E. Tax, Guangfa Zhang. nar, 29(1):111-113, 2001.

Use of keyword hierarchies to interpret gene expression patternsDaniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky, Jacques Corbeil. bioinformatics, 17(4):319-326, 2001.

2000

Concerning the accuracy of MAST E-valuesTimothy L. Bailey, Michael Gribskov. bioinformatics, 16(5):488-489, 2000.

ISMB-2000: Bioinformatics enters a new millenniumPhilip E. Bourne, Michael Gribskov. bioinformatics, 16(9):749, 2000.

1998

Methods and Statistics for Combining Motif Match ScoresTimothy L. Bailey, Michael Gribskov. jcb, 5(2):211-222, 1998.

Combining evidence using p-values: application to sequence homology searchesTimothy L. Bailey, Michael Gribskov. bioinformatics, 14(1):48-54, 1998.

1997

Score Distributions for Simultaneous Matching to Multiple MotifsTimothy L. Bailey, Michael Gribskov. jcb, 4(1):45-60, 1997.

1996

The Megaprior Heuristic for Discovering Protein Sequence PatternsTimothy L. Bailey, Michael Gribskov. ismb 1996: 15-24

Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence MatchingMichael Gribskov, Nina L. Robinson. CANDC, 20(1):25-33, 1996. [doi]

1993

A Mechanistic View of Proteins and Their SequencesMichael Gribskov. CANDC, 17(2):113-116, 1993. [doi]

1992

The Language Metaphor in Sequence AnalysisMichael Gribskov. CANDC, 16(2):85-88, 1992. [doi]

1988

Profile scanning for three-dimensional structural patterns in protein sequencesMichael Gribskov, M. Homyak, J. Edenfield, David Eisenberg. bioinformatics, 4(1):61-66, 1988.

1986

PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software packageMichael Gribskov, R. R. Burgess, J. Devereux. nar, 14(1):327-334, 1986.

1984

The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expressionMichael Gribskov, J. Devereux, R. R. Burgess. nar, 12(1):539-549, 1984.

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