Robert Küffner - researchr alias

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Viewing Publication 1 - 19 from 19

2017

KNIME4NGS: a comprehensive toolbox for next generation sequencing analysisMaximilian Hastreiter, Tim Jeske, Jonathan Hoser, Michael Kluge, Kaarin Ahomaa, Marie-Sophie Friedl, Sebastian J. Kopetzky, Jan-Dominik Quell, H.-Werner Mewes, Robert Küffner. bioinformatics, 33(10):1565-1567, 2017. [doi]

2015

2013

A Turing test for artificial expression dataRobert Maier, Ralf Zimmer, Robert Küffner. bioinformatics, 29(20):2603-2609, 2013. [doi]

2012

Inferring gene regulatory networks by ANOVARobert Küffner, Tobias Petri, Pegah Tavakkolkhah, Lukas Windhager, Ralf Zimmer. bioinformatics, 28(10):1376-1382, 2012. [doi]

Rigorous assessment of gene set enrichment testsHaroon Naeem, Ralf Zimmer, Pegah Tavakkolkhah, Robert Küffner. bioinformatics, 28(11):1480-1486, 2012. [doi]

2011

2010

miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literatureHaroon Naeem, Robert Küffner, Gergely Csaba, Ralf Zimmer. bmcbi, 11:135, 2010. [doi]

2008

ProSAS: a database for analyzing alternative splicing in the context of protein structuresFabian Birzele, Robert Küffner, Franziska Meier, Florian Oefinger, Christian Potthast, Ralf Zimmer. nar, 36(Database-Issue):63-68, 2008. [doi]

2007

RelEx - Relation extraction using dependency parse treesKatrin Fundel, Robert Küffner, Ralf Zimmer. bioinformatics, 23(3):365-371, 2007. [doi]

2006

Reliable gene signatures for microarray classification: assessment of stability and performanceChad A. Davis, Fabian Gerick, Volker Hintermair, Caroline C. Friedel, Katrin Fundel, Robert Küffner, Ralf Zimmer. bioinformatics, 22(19):2356-2363, 2006. [doi]

2005

Data Processing Effects on the Interpretation of Microarray Gene Expression ExperimentsKatrin Fundel, Robert Küffner, Thomas Aigner, Ralf Zimmer. gcb 2005: 77-91

Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contextsRobert Küffner, Katrin Fundel, Ralf Zimmer. eccb 2005: 267 [doi]

2001

Executable Petri net models for the analysis of metabolic pathwaysHartmann J. Genrich, Robert Küffner, Klaus Voss. STTT, 3(4):394-404, 2001. [doi]

2000

Pathway analysis in metabolic databases via differential metabolic display (DMD)Robert Küffner, Ralf Zimmer, Thomas Lengauer. bioinformatics, 16(9):825-836, 2000.

Analysis of Gene Expression Data with Pathway ScoresAlexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer. ismb 2000: 407-417

1999

Pathway analysis in metabolic databases via differetial metabolic display (DMD)Robert Küffner, Ralf Zimmer, Thomas Lengauer. gcb 1999: 141-147

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