- Julien Ehrsam, Christophe Gaudet-Blavignac, Mirjam Mattei, Monika Baumann, Christian Lovis. Semantics in action: a guide for representing clinical data elements with SNOMED CT. J. Biomedical Semantics, 16(1):7, December 2025.
- Gene Godbold, Jody Proescher, Pascale Gaudet. New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern. J. Biomedical Semantics, 16(1):4, December 2025.
- Shuya Ikeda, Kiyoko F. Aoki-Kinoshita, Hirokazu Chiba, Susumu Goto, Masae Hosoda, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Tazro Ohta, Hiromasa Ono, Terue Takatsuki, Yasunori Yamamoto, Toshiaki Katayama. Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features. J. Biomedical Semantics, 16(1):1, December 2025.
- Shawn Zheng Kai Tan, Shounak Baksi, Thomas Gade Bjerregaard, Preethi Elangovan, Thrishna Kuttikattu Gopalakrishnan, Darko Hric, Joffrey Joumaa, Beidi Li, Kashif Rabbani, Santhosh Kannan Venkatesan, Joshua Daniel Valdez, Saritha Vettikunnel Kuriakose. Digital evolution: Novo Nordisk's shift to ontology-based data management. J. Biomedical Semantics, 16(1):6, December 2025.
- Yiyuan Pu, Daniel Beck, Karin Verspoor. Enriched knowledge representation in biological fields: a case study of literature-based discovery in Alzheimer's disease. J. Biomedical Semantics, 16(1):3, December 2025.
- Sebastian Duesing, Jason Bennett, James A. Overton, Randi Vita, Bjoern Peters. Standardizing free-text data exemplified by two fields from the Immune Epitope Database. J. Biomedical Semantics, 16(1):5, December 2025.
- Rita Torres Sousa, Heiko Paulheim. Gene expression knowledge graph for patient representation and diabetes prediction. J. Biomedical Semantics, 16(1):2, December 2025.
- Abdullateef I. Almudaifer, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M. Carroll, Estera Crisan, William Bradford, Lauren Walter, Ellen F. Eaton, Sue S. Feldman, John D. Osborne. Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection. J. Biomedical Semantics, 15(1):11, December 2024.
- Sabrina Toro, Anna V. Anagnostopoulos, Susan M. Bello, Kai Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn T. O'Neil, David Osumi-Sutherland, Aleix Puig-Barbe, Justin T. Reese, Leonore Reiser, Sofia M. C. Robb, Troy Ruemping, James Seager, Eric Sid, Raymund Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall. Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). J. Biomedical Semantics, 15(1):19, December 2024.
- Xiaofeng Liao, Thomas H. A. Ederveen, Anna Niehues, Casper de Visser, Junda Huang, Firdaws Badmus, Cenna Doornbos, Yuliia Orlova, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen. FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis. J. Biomedical Semantics, 15(1):20, December 2024.