Isidore Rigoutsos - researchr alias

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Viewing Publication 1 - 44 from 44

2022

Reproducibility efforts as a teaching tool: A pilot studyNestoras Karathanasis, Daniel Hwang, Vibol Heng, Rimal Abhimannyu, Phillip Slogoff-Sevilla, Gina Buchel, Victoria Frisbie, Peiyao Li, Dafni Kryoneriti, Isidore Rigoutsos. ploscb, 18(11):1010615, November 2022. [doi]

2021

IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasetsPhillipe Loher, Nestoras Karathanasis, Eric Londin, Paul F. Bray, Venetia Pliatsika, Aristeidis G. Telonis, Isidore Rigoutsos. bioinformatics, 37(13):1828-1838, 2021. [doi]

2020

2018

MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projectsVenetia Pliatsika, Phillipe Loher, Rogan Magee, Aristeidis G. Telonis, Eric Londin, Megumi Shigematsu, Yohei Kirino, Isidore Rigoutsos. nar, 46(Database-Issue), 2018. [doi]

2017

Threshold-seq: a tool for determining the threshold in short RNA-seq datasetsRogan Magee, Phillipe Loher, Eric Londin, Isidore Rigoutsos. bioinformatics, 33(13):2034-2036, 2017. [doi]

2016

MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragmentsVenetia Pliatsika, Phillipe Loher, Aristeidis G. Telonis, Isidore Rigoutsos. bioinformatics, 32(16):2481-2489, 2016. [doi]

Consequential considerations when mapping tRNA fragmentsAristeidis G. Telonis, Phillipe Loher, Yohei Kirino, Isidore Rigoutsos. bmcbi, 17:123, 2016. [doi]

2012

Interactive exploration of RNA22 microRNA target predictionsPhillipe Loher, Isidore Rigoutsos. bioinformatics, 28(24):3322-3323, 2012. [doi]

2010

Anchoring millions of distinct reads on the human genome within secondsTien Huynh, Michail Vlachos, Isidore Rigoutsos. edbt 2010: 252-262 [doi]

2009

Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional ClassesAristotelis Tsirigos, Isidore Rigoutsos. ploscb, 5(12), 2009. [doi]

2006

2004

The web server of IBM s Bioinformatics and Pattern Discovery group: 2004 updateTien Huynh, Isidore Rigoutsos. nar, 32(Web-Server-Issue):10-15, 2004.

Of parts and relationships: an unending questIsidore Rigoutsos. CIKM 2004: 250 [doi]

Chung-Kwei: a Pattern-discovery-based System for the Automatic Identification of Unsolicited E-mail Messages (SPAM)Isidore Rigoutsos, Tien Huynh. ceas 2004: [doi]

Report on BIOKDD04: workshop on data mining in BioinformaticsMohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos. sigkdd, 6(2):153-154, 2004. [doi]

2003

2002

Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data MiningXiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang. tkde, 14(4):731-749, 2002. [doi]

2001

2000

Knowledge discovery in biological domains (tutorial AM-3)Aris Floratos, Igor Jurisica, Isidore Rigoutsos. kdd 2000: 95-163 [doi]

Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithmLaxmi Parida, Isidore Rigoutsos, Aris Floratos, Daniel E. Platt, Yuan Gao. soda 2000: 297-308 [doi]

1999

1998

1997

Automated Discovery of Active Motifs in Three Dimensional MoleculesXiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang. kdd 1997: 89-95

1996

The Impact of Hashing Function Choice on the Load Balancing in Very Large DartasetsIsidore Rigoutsos, Alex Delis. seke 1996: 301-308

1995

A Bayesian Approach to Model Matching with Geometric HashingIsidore Rigoutsos, Robert A. Hummel. cviu, 62(1):11-26, 1995. [doi]

1993

FLASH: A Fast Look-Up Algorithm for String HomologyAndrea Califano, Isidore Rigoutsos. ismb 1993: 56-64

FLASH: a fast look-up algorithm for string homologyAndrea Califano, Isidore Rigoutsos. cvpr 1993: 353-359 [doi]

Distributed Bayesian object recognitionIsidore Rigoutsos, Robert A. Hummel. cvpr 1993: 180-186 [doi]

1992

Massively Parallel Model Matching: Geometric Hashing on the Connection MachineIsidore Rigoutsos, Robert A. Hummel. Computer, 25(2):33-42, 1992.

Visuo-Tactual Coarseness Estimation Tasks: Experiments and ModelingIsidore Rigoutsos. In Colin Archibald, Emil M. Petriu, editors, Advances in Machine Vision: Strategies and Applications. Volume 32 of World scientific series in computer science, pages 257-270, World Scientific, 1992. [doi]

Massively Parallel Bayesian Object RecognitionIsidore Rigoutsos. PhD thesis, New York University, USA, 1992. [doi]

1991

An algorithm for point clustering and grid generationMarsha Berger, Isidore Rigoutsos. tsmc, 21(5):1278-1286, 1991. [doi]

1986

Determining the 3-D Motion of a Rigid Surface Patch Without Correspondence under Perspective ProjectionYiannis Aloimonos, Isidore Rigoutsos. AAAI 1986: 681-688

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