| 1 | -- | 6 | Eugene W. Myers. Guest Editor s Foreword: Special Issue on Computational Molecular Biology |
| 7 | -- | 51 | John D. Kececioglu, Eugene W. Myers. Combinatiorial Algorithms for DNA Sequence Assembly |
| 52 | -- | 76 | Farid Alizadeh, Richard M. Karp, Lee Aaron Newberg, Deborah K. Weisser. Physical Mapping of Chromosomes: A Combinatorial Problem in Molecular Biology |
| 77 | -- | 105 | Pavel A. Pevzner. DNA Physical Mapping and Alternating Eulerian Cycles in Colored Graphs |
| 106 | -- | 134 | Kun-Mao Chao, Webb Miller. Linear-Space Algorithms that Build Local Alignments from Fragments |
| 135 | -- | 154 | Pavel A. Pevzner, Michael S. Waterman. Multiple Filtration and Approximate Pattern Matching |
| 155 | -- | 179 | Martin Farach, Sampath Kannan, Tandy Warnow. A Robust Model for Finding Optimal Evolutionary Trees |
| 180 | -- | 210 | John D. Kececioglu, David Sankoff. Exact and Approximation Algorithms for Sorting by Reversals, with Application to Genome Rearrangement |
| 211 | -- | 243 | James R. Knight, Eugene W. Myers. Super-Pattern Matching |