Journal: Biosystems

Volume 90, Issue 3

591 -- 601Thomas Eißing, Steffen Waldherr, Frank Allgöwer, Peter Scheurich, Eric Bullinger. Steady state and (bi-) stability evaluation of simple protease signalling networks
602 -- 613A. Carlos O. Ferraz, Gauri S. Mittal, Walter K. Bilanski, Hussein A. Abdullah. Mathematical modeling of laser based potato cutting and peeling
614 -- 622Tadashi Yamada, Chikara Furusawa, Keisuke Nagahisa, Akiko Kashiwagi, Tetsuya Yomo, Hiroshi Shimizu. Analysis of fluctuation in protein abundance without promoter regulation based on Escherichia coli continuous culture
623 -- 635Tessa E. Pronk, Andy D. Pimentel, Marco Roos, Timo M. Breit. Taking the example of computer systems engineering for the analysis of biological cell systems
636 -- 655Subodh B. Rawool, K. V. Venkatesh. Steady state approach to model gene regulatory networks - Simulation of microarray experiments
656 -- 675Andrei Khrennikov. Toward an adequate mathematical model of mental space: Conscious/unconscious dynamics on m-adic trees
676 -- 686Ali Tiraihi, Taki Tiraihi. Early onset of regionalization in EMS lineage of C. elegans embryo: A quantitative study
687 -- 697Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík. A P system and a constructive membrane-inspired DNA algorithm for solving the Maximum Clique Problem
698 -- 706Jin-Peng Qi, Shi-Huang Shao, Jinli Xie, Y. Zhu. A mathematical model of P53 gene regulatory networks under radiotherapy
707 -- 715Takeru Hachiro, Koichi Kawahara, Rie Sato, Yoshiko Yamauchi, Daisuke Matsuyama. Changes in the fluctuation of the contraction rhythm of spontaneously beating cardiac myocytes in cultures with and without cardiac fibroblasts
716 -- 727Taichi Haruna, Yukio-Pegio Gunji. Duality between decomposition and gluing: A theoretical biology via adjoint functors
728 -- 737Jun Tanimoto, Hiroki Sagara. A study on emergence of alternating reciprocity in a 2 × 2 game with 2-length memory strategy
738 -- 749Konrad Szacilowski. Biomedical implications of information processing in chemical systems: Non-classical approach to photochemistry of coordination compounds
750 -- 768Sungho Jo. A neurobiological model of the recovery strategies from perturbed walking
769 -- 782Marc Toussaint, Werner von Seelen. Complex adaptation and system structure
783 -- 791Koji Sawa, Yukio-Pegio Gunji. Dialogue and causality: Global description from local observations and vague communications
792 -- 801Anand Anbarasu, Sudha Anand, Sethumadhavan Rao. Investigations on unconventional hydrogen bonds in RNA binding proteins: The role of CH..O=C interactions
802 -- 807S.-H. Lee, P. Bardunias, N.-Y. Su. Optimal length distribution of termite tunnel branches for efficient food search and resource transportation
808 -- 817Sunita Gakkhar, Brahampal Singh, Raid Kamel Naji. Dynamical behavior of two predators competing over a single prey
818 -- 829P. Banik, P. Pramanik, R. R. Sarkar, S. Bhattacharya, J. Chattopadhayay. A mathematical model on the effect of M. denticulata weed on different winter crops
830 -- 842Radina P. Soebiyanto, Sree N. Sreenath, Cheng-Kui Qu, Kenneth A. Loparo, Kevin D. Bunting. Complex systems biology approach to understanding coordination of JAK-STAT signaling
843 -- 855Sung Gun Lee, Jun-Hyung Park, Bo Kyeng Hou, Young Han Kim, Cheol Min Kim, Kyu Suk Hwang. Effect of weight-added regulatory networks on constraint-based metabolic models of Escherichia coli
856 -- 869Jun Tanimoto. A study of indirect reciprocity involving a reputation system or a simple tag system in a one-shot, multi-player game
870 -- 880Darapond Triampo, Wannapong Triampo, I.-Ming Tang, Yongwimon Lenbury. The stochastic model of non-equilibrium mutagen-induced alterations of DNA: Implication to genetic instability in cancer
881 -- 889Chris J. Tinsley. Transforming bottom-up topographic representations with top-down signals in the brain
890 -- 896S.-H. Lee, N.-Y. Su, P. Bardunias. Exploring landscape structure effect on termite territory size using a model approach
897 -- 902Pei-ai Zhang, Pu-yan Nie, Dai-qiang Hu, Fei-yan Zou. The analysis of bi-level evolutionary graphs
903 -- 910Kazushi Murakoshi, Kyoji Suganuma. A neural circuit model forming semantic network with exception using spike-timing-dependent plasticity of inhibitory synapses

Volume 90, Issue 2

309 -- 313D. Chakrabarty, S. K. Das. Bioturbation-induced phosphorous release from an insoluble phosphate source
314 -- 322S.-H. Lee, N.-Y. Su, P. Bardunias, H. F. Li. Food encounter rate of simulated termite tunnels in heterogeneous landscapes
323 -- 339Siren R. Veflingstad, Erik Plahte. Analysis of gene regulatory network models with graded and binary transcriptional responses
340 -- 349Abir U. Igamberdiev. Physical limits of computation and emergence of life
350 -- 361Hong Zhang, Jianjun Jiao, Lansun Chen. Pest management through continuous and impulsive control strategies
362 -- 370Takaaki Kamatani, Tetsuya Yamamoto. Comparison of codon usage and tRNAs in mitochondrial genomes of Candida species
371 -- 378Shovonlal Roy, J. Chattopadhyay. Enrichment and stability: A phenomenological coupling of energy value and carrying capacity
379 -- 388E. Manjarrez, Pablo Balenzuela, Jordi García-Ojalvo, E. E. Vásquez, Lourdes Martínez, A. Flores, Claudio R. Mirasso. Phantom reflexes: Muscle contractions at a frequency not physically present in the input stimuli
389 -- 404Eugenio Andrade. A semiotic framework for evolutionary and developmental biology
405 -- 413Wen-Lin Huang, Hung-Ming Chen, Shiow-Fen Hwang, Shinn-Ying Ho. Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method
414 -- 420Koya Mori, Rintaro Saito, Shinichi Kikuchi, Masaru Tomita. Inferring rules of Escherichia coli translational efficiency using an artificial neural network
421 -- 441Bin Yan, Derek R. Lovley, Julia Krushkal. Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens
442 -- 448Kantaro Fujiwara, Hiroki Fujiwara, Minoru Tsukada, Kazuyuki Aihara. Reproducing bursting interspike interval statistics of the gustatory cortex
449 -- 455Hiroaki Mizuno, Azusa Hamada, Katsuhiko Shimada, Hajime Honda. Tropomyosin as a regulator of the sliding movement of actin filaments
456 -- 466Russell W. Anderson, Christopher Stomberg, Charles W. Hahm, Venkatesh Mani, Daniel D. Samber, Vitalii V. Itskovich, Laura Valera-Guallar, John T. Fallon, Pavel B. Nedanov, Joel Huizenga, Zahi A. Fayad. Automated classification of atherosclerotic plaque from magnetic resonance images using predictive models
467 -- 474Daniel E. Bentil, Osei M. Bonsu, Christopher D. Ellingwood, James P. Hoffmann. Analysis of a Schnute postulate-based unified growth model for model selection in evolutionary computations
475 -- 485Sumedha, Olivier C. Martin, Andreas Wagner. New structural variation in evolutionary searches of RNA neutral networks
486 -- 495Hiroshi Yoshida, Hirokazu Anai, Katsuhisa Horimoto. Derivation of rigorous conditions for high cell-type diversity by algebraic approach
496 -- 508Gerhard Werner. Metastability, criticality and phase transitions in brain and its models
509 -- 515M. Broom, P. Nouvellet, J. P. Bacon, D. Waxman. Parameter-free testing of the shape of a probability distribution
516 -- 528Hui-Ling Huang, Fang-Lin Chang. ESVM: Evolutionary support vector machine for automatic feature selection and classification of microarray data
529 -- 534Sharareh Dariani, Mansoor Keshavarz, Mohsen Parviz, Mohammad Reza Raoufy, Shahriar Gharibzadeh. Modeling force-velocity relation in skeletal muscle isotonic contraction using an artificial neural network
535 -- 545Peter C. Y. Chen, Jeremy W. Chen. A Markovian approach to the control of genetic regulatory networks
546 -- 559Henry C. Tuckwell, Laurent Toubiana. Dynamical modeling of viral spread in spatially distributed populations: stochastic origins of oscillations and density dependence
560 -- 567Renbin Xiao, Yichun Xu, Martyn Amos. Two hybrid compaction algorithms for the layout optimization problem
568 -- 572Jun Tanimoto. Differences in dynamics between discrete strategies and continuous strategies in a multi-player game with a linear payoff structure
573 -- 581Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho. ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features
582 -- 589S. Mukherjee, V. Sangwan, A. Taneja, B. Seth. Stability of an underactuated bipedal gait

Volume 90, Issue 1

1 -- 19Vivek K. Mutalik, K. V. Venkatesh. A theoretical steady state analysis indicates that induction of Escherichia coli glnALG operon can display all-or-none behavior
20 -- 27Bin-Guang Ma. How to describe genes: Enlightenment from the quaternary number system
28 -- 39Wentao Ma, Chunwu Yu, Wentao Zhang. Monte Carlo simulation of early molecular evolution in the RNA World
40 -- 47Swetlana Nikolajewa, Maik Friedel, Thomas Wilhelm. Boolean networks with biologically relevant rules show ordered behavior
48 -- 60Andrei Paun, Gheorghe Paun. Small universal spiking neural P systems
61 -- 77Jean-Philippe Thivierge, Evan Balaban. Getting into shape: Optimal ligand gradients for axonal guidance
78 -- 86Hui-Ling Huang, Chong-Cheng Lee, Shinn-Ying Ho. Selecting a minimal number of relevant genes from microarray data to design accurate tissue classifiers
87 -- 100S. Pal, Samrat Chatterjee, J. Chattopadhyay. Role of toxin and nutrient for the occurrence and termination of plankton bloom - Results drawn from field observations and a mathematical model
101 -- 104Kazushi Murakoshi, Yuichi Sato. Reducing topological defects in self-organizing maps using multiple scale neighborhood functions
105 -- 114Jun Tanimoto, Hiroki Sagara. Relationship between dilemma occurrence and the existence of a weakly dominant strategy in a two-player symmetric game
115 -- 120Yoko Nomura, Yohei Yokobayashi. Dual selection of a genetic switch by a single selection marker
151 -- 160Shovonlal Roy, J. Chattopadhyay. Enrichment and ecosystem stability: Effect of toxic food
161 -- 178Bhaskar DasGupta, German Andres Enciso, Eduardo D. Sontag, Yi Zhang 0002. Algorithmic and complexity results for decompositions of biological networks into monotone subsystems
179 -- 187Yukako Nakayama, Koichi Kawahara, Takeru Hachiro, Yoshiko Yamauchi, Mitsuru Yoneyama. Possible involvement of ATP-purinoceptor signalling in the intercellular synchronization of intracellular Ca:::2+::: oscillation in cultured cardiac myocytes
188 -- 196S. K. Das, D. Chakrabarty. The use of fish community structure as a measure of ecological degradation: A case study in two tropical rivers of India
197 -- 210Sungwon Jung, Kwang H. Lee, Doheon Lee. H-CORE: Enabling genome-scale Bayesian analysis of biological systems without prior knowledge
211 -- 223Diana Karlsson, Stefan Karlsson, Erik Gustafsson, Birgitta Henriques Normark, Patric Nilsson. Modeling the regulation of the competence-evoking quorum sensing network in Streptococcus pneumoniae
234 -- 241Shinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang. Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method
242 -- 252Che-Hsin Lin, Hsiao-Ping Cheng, Chang-Biau Yang, Chia-Ning Yang. Solving satisfiability problems using a novel microarray-based DNA computer
253 -- 262Tomoaki Kawaguchi, Hajime Honda. Unidirectional movement of an actin filament taking advantage of temperature gradients
263 -- 272Sidarta Ribeiro, Angelo Loula, Ivan E. de Araújo, Ricardo R. Gudwin, João Queiroz. Symbols are not uniquely human
273 -- 286Motohiko Hatakeyama, Ichiro Tsuda. Internal logic viewed from observation space: Theory and a case study
287 -- 294Douglas B. Murray, David Lloyd. A tuneable attractor underlies yeast respiratory dynamics