Journal: BMC Bioinformatics

Volume 12, Issue S-8

0 -- 0Anália Lourenço, Michael Conover, Andrew Wong, Azadeh Nematzadeh, Fengxia Pan, Hagit Shatkay, Luis Mateus Rocha. A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature
0 -- 0Chih-Hsuan Wei, Hung-Yu Kao. Cross-species gene normalization by species inference
0 -- 0Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text
0 -- 0Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers. Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases
0 -- 0Gerold Schneider, Simon Clematide, Fabio Rinaldi. Detection of interaction articles and experimental methods in biomedical literature
0 -- 0Shashank Agarwal, Feifan Liu, Hong Yu. Simple and efficient machine learning frameworks for identifying protein-protein interaction relevant articles and experimental methods used to study the interactions
0 -- 0Sun Kim, W. John Wilbur. Classifying protein-protein interaction articles using word and syntactic features
0 -- 0Cheng-Ju Kuo, Maurice H. T. Ling, Chun-Nan Hsu. Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization
0 -- 0Richard Tzong-Han Tsai, Po-Ting Lai. Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection
0 -- 0Xinglong Wang, Rafal Rak, Angelo C. Restificar, Chikashi Nobata, C. J. Rupp, Riza Theresa Batista-Navarro, Raheel Nawaz, Sophia Ananiadou. Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature
0 -- 0Cecilia N. Arighi, Phoebe M. Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle G. Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J. Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E. Thomas, Luca Toldo, Lynette Hirschman, Cathy H. Wu. BioCreative III interactive task: an overview
0 -- 0Cecilia N. Arighi, Zhiyong Lu, Martin Krallinger, Kevin Bretonnel Cohen, W. John Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H. Wu. Overview of the BioCreative III Workshop
0 -- 0Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur. The gene normalization task in BioCreative III