| 8 | -- | 9 | Harold J. Morowitz. My favorite molecule |
| 10 | -- | 11 | Russ Abbott. Complex systems engineering: Putting complex systems to work |
| 10 | -- | 13 | Peter Schuster. A beginning of the end of the holism versus reductionism debate?: Molecular biology goes cellular and organismic |
| 12 | -- | 21 | Wolfgang Banzhaf, Nelishia Pillay. Why complex systems engineering needs biological development |
| 22 | -- | 29 | Jeffrey C. Way, Pamela A. Silver. Systems engineering without an engineer: Why we need systems biology |
| 30 | -- | 49 | Russ Abbott. Putting complex systems to work |
| 50 | -- | 61 | Gregory Hornby. Modularity, reuse, and hierarchy: Measuring complexity by measuring structure and organization |
| 51 | -- | 59 | Harold J. Morowitz, Eric Smith. Energy flow and the organization of life |
| 60 | -- | 75 | Thomas J. Wheeler. Analysis, modeling, emergence & integration in complex systems: A modeling and integration framework & system biology |
| 62 | -- | 66 | Alfred W. Hübler, Kirstin C. Phelps. Guiding a self-adjusting system through chaos |
| 67 | -- | 77 | Alex J. Ryan. Emergence is coupled to scope, not level |
| 78 | -- | 91 | Jürgen Scheffran, Bruce Hannon. From complex conflicts to stable cooperation: Cases in environment and security |