| 1 | -- | 2 | Alessandro Dal Palù, Agostino Dovier, Sebastian Will. Introduction to the Special Issue on Bioinformatics and Constraints |
| 3 | -- | 20 | Pedro Barahona, Ludwig Krippahl. Constraint Programming in Structural Bioinformatics |
| 21 | -- | 65 | Steve Dworschak, Susanne Grell, Victoria J. Nikiforova, Torsten Schaub, Joachim Selbig. Modeling Biological Networks by Action Languages via Answer Set Programming |
| 66 | -- | 90 | Luca Bortolussi, Alberto Policriti. Modeling Biological Systems in Stochastic Concurrent Constraint Programming |
| 91 | -- | 109 | Matthias Zytnicki, Christine Gaspin, Thomas Schiex. DARN! A Weighted Constraint Solver for RNA Motif Localization |
| 110 | -- | 129 | Sebastian Will, Anke Busch, Rolf Backofen. Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination |
| 130 | -- | 154 | Martí Sánchez, Simon de Givry, Thomas Schiex. Mendelian Error Detection in Complex Pedigrees Using Weighted Constraint Satisfaction Techniques |
| 155 | -- | 179 | Inês Lynce, João Marques-Silva, Steven David Prestwich. Boosting Haplotype Inference with Local Search |
| 180 | -- | 205 | Owen Bourne, Abdul Sattar, Scott D. Goodwin. A Constraint-Based Autonomous 3D Camera System |
| 206 | -- | 226 | Frédéric Goualard, Christophe Jermann. A Reinforcement Learning Approach to Interval Constraint Propagation |