Journal: Computer Physics Communications

Volume 169, Issue 1-3

1 -- 8J. B. Neaton, K. H. Khoo, C. D. Spataru, Steven G. Louie. Electron transport and optical properties of carbon nanostructures from first principles
9 -- 13Rosa Di Felice, Stefano Corni. Computational approach to study electron-transfer proteins: Azurin for bio-molecular devices
14 -- 19Jean-Yves Raty, Giulia Galli. First principle study of nanodiamond optical and electronic properties
20 -- 23Xiaobao Yang, Jun Ni. Ground states of potassium adsorbate on single-walled carbon nanotubes
24 -- 27Caetano R. Miranda, Sandro Scandolo. Computational materials science meets geophysics: dislocations and slip planes of MgO
28 -- 31A. Qteish, A. I. Al-Sharif, M. Fuchs, M. Scheffler, S. Boeck, J. Neugebauer. Exact-exchange calculations of the electronic structure of AlN, GaN and InN
32 -- 35C. Sbraccia, C. A. Pignedoli, A. Catellani, R. Di Felice, P. L. Silvestrelli, F. Toigo, F. Ancilotto, C. M. Bertoni. Acetylene on Si(111) from computer simulations
36 -- 39Christoph Dellago, Mor M. Naor. Dipole moment of water molecules in narrow pores
40 -- 43Alessandro Mattoni, Luciano Colombo, Fabrizio Cleri. Crack-tip stress shielding by a hard fiber in beta-SiC: an atomistic study
44 -- 49Fabrizio Cleri. Evolution of dislocation cell structures in plastically deformed metals
50 -- 53M. C. Righi, C. A. Pignedoli, R. Di Felice, C. M. Bertoni, A. Catellani. Kinetic Monte Carlo simulations of C diffusion on sqrt(3)×sqrt(3) beta-SiC(111) based on ab initio calculations
54 -- 56Erik Johansson, Kim Bolton, Peter Ahlström. Simulation of water vapor clusters in equilibrium with liquid water
57 -- 59Michael Schreiber, Sibylle Gemming. Density-functional investigation of alloyed metallic nanowires
60 -- 63Ilya Valuev. Reactive potentials for molecular dynamics with cluster multi-range interpolation
64 -- 68Ronald Blaak, Hartmut Löwen. Umbrella sampling in non-equilibrium computer simulations
69 -- 74Nicolas Levy, Daniel Borgis, Massimo Marchi. A dielectric continuum model of solvation for complex solutes
75 -- 81Kurt Kremer, Sathish K. Sukumaran, Ralf Everaers, Gary S. Grest. Entangled polymer systems
82 -- 88Doros N. Theodorou. Hierarchical modeling of amorphous polymers
89 -- 94Jean-Paul Ryckaert. From local jumps to entangled chain dynamics in polyethylene melts
95 -- 98Irene Burghardt, Lorenz S. Cederbaum, James T. Hynes. Ultrafast excited-state charge transfer at a conical intersection: effects of an environment
99 -- 103Claire Loison, Michel Mareschal, Friederike Schmid. Fluctuations and defects in lamellar stacks of amphiphilic bilayers
104 -- 106Kang Kim, Yasuya Nakayama, Ryoichi Yamamoto. A smoothed profile method for simulating charged colloidal dispersions
107 -- 110Andrey Milchev, Kurt Binder. Adsorption-induced polymer translocation through a nanopore: a Monte Carlo investigation
111 -- 113Michael Bachmann, Wolfhard Janke. Conformational transitions of heteropolymers
114 -- 116Hsiao-Ping Hsu, Walder Nadler, Peter Grassberger. Statistics of lattice animals
117 -- 121Tanja Schilling, Daan Frenkel. Nucleation in suspensions of anisotropic colloids
122 -- 125Enzo Orlandini, Davide Marenduzzo, Julia M. Yeomans. Shear dynamics in cholesterics
126 -- 129Ana Damjanovic, Bertrand García-Moreno E., Eaton E. Lattman, Angel E. García. Molecular dynamics study of hydration of the protein interior
130 -- 134Manuela Cavallari, Alessandro Desideri, Mattia Falconi, Mauro Ferrario. Molecular dynamics simulations of the Trp repressor-DNA complex and the AV77 mutant
135 -- 138Carlo Cavazzoni, Renato Colle, Riccardo Farchioni, Giuseppe Grosso. Base and salt 3D forms of Emeraldine II polymers by Car-Parrinello molecular dynamics
139 -- 143Hiroaki Nakamura, Yuichi Tamura. Phase diagram for self-assembly of amphiphilic molecule C::12::E::6:: by dissipative particle dynamics simulation
144 -- 148Peter Young. Recent numerical results on spin glasses
149 -- 152D. P. Landau, F. Tavazza, J. Adler. Monte Carlo simulations of a compressible Ising ferromagnet at constant volume
153 -- 159S. Atzeni, Angelo A. Schiavi, F. Califano, F. Cattani, F. Cornolti, D. Del Sarto, T. V. Liseykina, A. Macchi, F. Pegoraro. Fluid and kinetic simulation of inertial confinement fusion plasmas
160 -- 165A. C. Maggs, J. Rottler. Auxiliary field simulation and Coulomb's law
166 -- 171Francesco Sciortino, Sergey V. Buldyrev, Cristiano De Michele, Giuseppe Foffi, Neda Ghofraniha, Emilia La Nave, Angel Moreno, Stefano Mossa, Ivan Saika-Voivod, Piero Tartaglia, Emanuela Zaccarelli. Routes to colloidal gel formation
172 -- 176Cedric Thieulot, Pep Español. Non-isothermal diffusion in a binary mixture with smoothed particle hydrodynamics
177 -- 182Jörg Rottler, Mark O. Robbins. Macroscopic friction laws and shear yielding of glassy solids
183 -- 187Eytan Domany. Analysis of DNA-chip and antigen-chip data: studies of cancer, stem cells and autoimmune diseases
188 -- 191Alberto Rosso, Werner Krauth. Variant Monte Carlo algorithm for driven elastic strings in random media
192 -- 196Ignacio Pagonabarraga, Fabrizio Capuani, Daan Frenkel. Mesoscopic lattice modeling of electrokinetic phenomena
197 -- 202K. Franzrahe, P. Henseler, A. Ricci, W. Strepp, S. Sengupta, M. Dreher, Chr. Kircher, M. Lohrer, W. Quester, K. Binder, P. Nielaba. Two-dimensional model colloids and nano wires: phase transitions, effects of external potentials and quantum effects
203 -- 206Simone Melchionna, Sauro Succi. Lattice Boltzmann-Poisson method for electrorheological nanoflows in ion channels
207 -- 209Chiara Marchetto, Francesco Califano, Maurizio Lontano. Turbulence healing via plasma-wave interaction: the results of a study via kinetic codes
210 -- 213Giuliano De Stefano, Oleg V. Vasilyev, Daniel E. Goldstein. A-priori dynamic test for deterministic/stochastic modeling in large-eddy simulation of turbulent flow
214 -- 217Paola Gallo, Andrea Attili, Mauro Rovere. Glass transition in confinement: a Lennard-Jones binary mixture study
218 -- 221Ta-Yuan Chen, Li-Ching Hsieh, Hoong-Chien Lee. Shannon information and self-similarity in whole genomes
222 -- 225Wolfhard Janke, Adriaan M. J. Schakel. Geometrical phase transitions
226 -- 229Kurt Binder, Marcus Müller, Andrey Milchev, D. P. Landau. Monte Carlo simulations of Ising models and polymer blends in double wedge geometry: Evidence for novel types of critical phenomena
230 -- 233Rudolf Hilfer, Bibudhananda Biswal, Hans-Georg Mattutis, Wolfhard Janke. Multicanonical simulations of the tails of the order-parameter distribution of the two-dimensional Ising model
234 -- 237Alexander K. Hartmann, Wolfgang Barthel, Martin Weigt. Phase transition and finite-size scaling in the vertex-cover problem
238 -- 242Dan Skandera. Different strategies of the central approach to the numerical hydrodynamics
243 -- 246S. Reynal, H. T. Diep. Hybrid multicanonical cluster algorithm for efficient simulations of long-range spin models
247 -- 250Vladimir V. Stegailov. Homogeneous and heterogeneous mechanisms of superheated solid melting and decay
251 -- 255J. Loverich, U. Shumlak. A discontinuous Galerkin method for the full two-fluid plasma model
256 -- 261Jochen Blumberger, Yoshitaka Tateyama, Michiel Sprik. Ab initio molecular dynamics simulation of redox reactions in solution
262 -- 266Gaurav Arya, Athanassios Z. Panagiotopoulos. Molecular modeling of shear-induced alignment of cylindrical micelles
267 -- 273Sara Bonella, David Coker. Linearized, time-dependent, non-adiabatic quantum correlation functions
274 -- 276Robert H. Swendsen, Marc Fasnacht, John M. Rosenberg. The adaptive integration method for calculating general free energy functions
277 -- 283Ron Elber. Computer simulations of protein folding: Classical trajectories by optimization of action
284 -- 288Thomas Bligaard, Hannes Jónsson. Optimization of hyperplanar transition states: Application to 2D test problems
289 -- 294Matthew J. McGrath, J. Ilja Siepmann, I-Feng W. Kuo, Christopher J. Mundy, Joost VandeVondele, Michiel Sprik, Jürg Hutter, Fawzi Mohamed, Matthias Krack, Michele Parrinello. Toward a Monte Carlo program for simulating vapor-liquid phase equilibria from first principles
295 -- 300Young C. Kim, Michael E. Fisher. Fluid coexistence close to criticality: scaling algorithms for precise simulation
301 -- 304Ryoichi Yamamoto, Yasuya Nakayama, Kang Kim. A method to resolve hydrodynamic interactions in colloidal dispersions
305 -- 308Daniele Passerone, Teodoro Laino. Exploring conical intersection spaces using pseudo-dynamics and band optimization: a novel strategy
309 -- 312Yiming Li, Shao-Ming Yu. A numerical iterative method for solving Schrödinger and Poisson equations in nanoscale single, double and surrounding gate metal-oxide-semiconductor structures
313 -- 316Mitsuyoshi Tomiya, Naotaka Yoshinaga, Shoichi Sakamoto, Aki Hirai. A large number of higher-energy eigenvalues of a huge dimensional matrix for a quantum chaotic study of a quartic potential
317 -- 321Hisashi Okumura, Yuko Okamoto. Molecular simulations in the multibaric-multithermal ensembles
322 -- 325D. Quigley, M. I. J. Probert. Constant pressure Langevin dynamics: theory and application
326 -- 330Roland G. Winkler, Marisol Ripoll, Kiaresch Mussawisade, Gerhard Gompper. Simulation of complex fluids by multi-particle-collision dynamics
331 -- 334Marco Masia, Michael Probst, Rossend Rey. On the performance of molecular polarization methods close to a point charge
335 -- 338David Curcó, Jordi Casanovas, Marc Roca, Carlos Alemán. A method for generating reliable atomistic models of amorphous polymers based on a random search of energy minima
339 -- 342Branislav Brutovsky, Gerald R. Kneller. Linear prediction of force time series to accelerate molecular dynamics simulations
343 -- 346Godehard Sutmann, Bernhard Steffen. A particle-particle particle-multigrid method for long-range interactions in molecular simulations
347 -- 352Zoltán Fodor. Lattice gauge theory and elementary particle physics
353 -- 361Ewald Müller. Simulating astrophysical phenomena: challenges and achievements
362 -- 364Karl Jansen. Going chiral: twisted mass versus overlap fermions
365 -- 369Roberto Capuzzo-Dolcetta. High performance computing for self-gravitating systems
370 -- 373Fabien Alet, Biagio Lucini, Michele Vettorazzo. A cluster algorithm for lattice gauge theories
374 -- 377Ian Hawke, Luca Baiotti, Luciano Rezzolla, Erik Schnetter. Gravitational waves from the 3D collapse of a neutron star to a Kerr black hole
378 -- 381Claudio Gheller, Gianfranco Brunetti. Merging clusters and the formation of radio haloes
382 -- 385Norbert Attig, Gunnar S. Bali, Thomas Düssel, Thomas Lippert, Hartmut Neff, Z. Prkaçin, Klaus Schilling. Demonstration of string breaking in quantum chromodynamics by large-scale eigenvalue computations
386 -- 393Michele Casula, Seiji Yunoki, Claudio Attaccalite, Sandro Sorella. Resonating valence bond wave function: from lattice models to realistic systems
394 -- 399Shiwei Zhang, Henry Krakauer, Wissam A. Al-Saidi, Malliga Suewattana. Quantum simulations of realistic systems by auxiliary fields
400 -- 403Alessandro Sergi, Raymond Kapral. Nonadiabatic chemical reactions
404 -- 407Saverio Moroni, Stefano Baroni. Computational spectroscopy of doped He clusters
408 -- 411Takahiro Mizusaki, Masatoshi Imada. Path-integral renormalization group method with quantum-number projection
412 -- 415P. D. Drummond, J. F. Corney. Quantum phase-space simulations of fermions and bosons
416 -- 420Marcos Rigol, Alejandro Muramatsu. Exact numerical approach to hard-core bosons on one-dimensional lattices
421 -- 425Markus Holzmann, Carlo Pierleoni, David M. Ceperley. Coupled Electron-Ion Monte Carlo calculations of atomic hydrogen
426 -- 429Florian R. Krajewski, Martin H. Müser. Many-body quantum dynamics by adiabatic path-integral molecular dynamics: Disordered Frenkel Kontorova models
430 -- 432Massimo Rontani, Carlo Cavazzoni, Guido Goldoni. The crossover between liquid and solid electron phases in quantum dots: A large-scale configuration-interaction study
433 -- 437Michael P. Allen. Computer simulation of multiscale phenomena in colloidal liquid crystals
438 -- 441A. Brandt. Multiscale solvers and systematic upscaling in computational physics
442 -- 448Raffaele Tripiccione. Strategies for dedicated computing for lattice gauge theories
449 -- 453Andrew Canning, David Raczkowski. Scaling first-principles plane-wave codes to thousands of processors
454 -- 456Carlo Cavazzoni, Tomaso Esposti Ongaro, Giovanni Erbacci, Augusto Neri, Giovanni Macedonio. High performance computing simulations of pyroclastic flows
457 -- 461Wolfhard Janke, Des Johnston, Ralph Kenna. Critical exponents from general distributions of zeroes
462 -- 466Simone Meloni, Mario Rosati, Alessandro Federico, Luca Ferraro, Alessandro Mattoni, Luciano Colombo. Computational Materials Science application programming interface (CMSapi): a tool for developing applications for atomistic simulations