Journal: Genomics, Proteomics & Bioinformatics

Volume 19, Issue 4

519 -- 521Ya Cui, Jason Sheng Li, Wei Li. From Reads to Insights: Integrative Pipelines for Biological Interpretation of ATAC-seq Data
522 -- 533Xi Cheng, LiLi Qian, Bo Wang, Minjia Tan, Jing Li 0107. SPA: A Quantitation Strategy for MS Data in Patient-derived Xenograft Models
534 -- 548Xujun Wang, Zhengtao Zhang, Wenyi Qin, Shiyi Liu, Cong Liu, Georgi Z. Genchev, Lijian Hui, Hongyu Zhao, Hui Lu 0004. RePhine: An Integrative Method for Identification of Drug Response-related Transcriptional Regulators
549 -- 564Zihu Guo, Yingxue Fu, Chao Huang, Chunli Zheng, Ziyin Wu, Xuetong Chen, Shuo Gao, Yaohua Ma, Mohamed Shahen, Yan Li 0025, Pengfei Tu, Jingbo Zhu, Zhenzhong Wang, Wei Xiao, Yonghua Wang. NOGEA: A Network-oriented Gene Entropy Approach for Dissecting Disease Comorbidity and Drug Repositioning
565 -- 577Shengquan Chen, Mingxin Gan, Hairong Lv, Rui Jiang 0001. DeepCAPE: A Deep Convolutional Neural Network for the Accurate Prediction of Enhancers
578 -- 583Tingting Chen, Xu Chen, Sisi Zhang, Junwei Zhu, Bixia Tang, Anke Wang, Lili Dong, Zhewen Zhang, Caixia Yu, Yanling Sun, Lianjiang Chi, Huanxin Chen, Shuang Zhai, Yubin Sun, Li Lan, Xin Zhang, Jing-Fa Xiao, Yiming Bao, Zhang Zhang 0002, Wenming Zhao. The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types
584 -- 589Meili Chen, Yingke Ma, Song Wu, Xinchang Zheng, Hongen Kang, Jian Sang, Xingjian Xu, Lili Hao, Zhaohua Li, Zheng Gong, Jing-Fa Xiao, Zhang Zhang 0002, Wenming Zhao, Yiming Bao. Genome Warehouse: A Public Repository Housing Genome-scale Data
590 -- 601Yu Wang, Fang-Yuan Shi, Yu Liang, Ge Gao. REVA as A Well-curated Database for Human Expression-modulating Variants
602 -- 610Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Tingrui Song, Huaxia Luo, Yajing Hao 0001, Runsheng Chen, Peng Zhang 0047, Shunmin He. SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling
611 -- 618Jiangming Huang, Mengxi Wu, Yang Zhang, Siyuan Kong, Mingqi Liu, Biyun Jiang, Pengyuan Yang, Weiqian Cao. O-glycosylation
619 -- 628Lilin Yin, Haohao Zhang, Zhenshuang Tang, Jingya Xu, Dong Yin, Zhiwu Zhang 0001, Xiaohui Yuan, Mengjin Zhu, Shuhong Zhao, Xinyun Li, Xiaolei Liu. rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool for Genome-wide Association Study
629 -- 640Jiabo Wang, Zhiwu Zhang 0001. GAPIT Version 3: Boosting Power and Accuracy for Genomic Association and Prediction
641 -- 651Shaopeng Liu, Daofeng Li, Cheng Lyu, Paul M. Gontarz, Benpeng Miao, Pamela A. F. Madden, Ting Wang, Bo Zhang 0009. AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis
652 -- 661Xintao Qiu, Avery S. Feit, Ariel Feiglin, Yingtian Xie, Nikolas Kesten, Len Taing, Joseph Perkins, Shengqing Gu, Yihao Li, Paloma Cejas, Ningxuan Zhou, Rinath Jeselsohn, Myles Brown, X. Shirley Liu, Henry W. Long. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis
662 -- 667Guanghong Zuo. CVTree: A Parallel Alignment-free Phylogeny and Taxonomy Tool Based on Composition Vectors of Genomes