Journal: Genomics, Proteomics & Bioinformatics

Volume 10, Issue 6

317 -- 325Kapil Raj Pandey, Narendra Maden, Barsha Poudel, Sailendra Pradhananga, Amit Kumar Sharma. The Curation of Genetic Variants: Difficulties and Possible Solutions
326 -- 335Lina Ma, Linghu Nie, Jing Liu, Bing Zhang 0007, Shuhui Song, Min Sun, Jin Yang, Yadong Yang, Xiangdong Fang, Songnian Hu, Yongliang Zhao, Jun Yu. An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic Mammary Epithelial Cells
336 -- 344Massimo Natale, Alfonso Caiazzo, Enrico M. Bucci, Elisa Ficarra. A Novel Gaussian Extrapolation Approach for 2D Gel Electrophoresis Saturated Protein Spots
345 -- 353Pavan Umate. Comparative Genomics of the Lipid-body-membrane Proteins Oleosin, Caleosin and Steroleosin in Magnoliophyte, Lycophyte and Bryophyte
354 -- 359Umair Seemab, Qurrat ul Ain, Muhammad Sulaman Nawaz, Zafar Saeed, Sajid Rashid. TrFAST: A Tool to Predict Signaling Pathway-specific Transcription Factor Binding Sites
360 -- 363Mohd Danishuddin, Lalima Kaushal, Mohd Hassan Baig, Asad U. Khan. AMDD: Antimicrobial Drug Database
364 -- 367Dhivya Selvaraj, Dhivya Shanmughanandhan, Rajeev Kumar Sarma, Jijo C. Joseph, Ramachandran V. Srinivasan, Sathishkumar Ramalingam. DNA Barcode ITS Effectively Distinguishes the Medicinal Plant Boerhavia diffusa from Its Adulterants

Volume 10, Issue 5

237 -- 238Tongbin Li, William C. S. Cho. MicroRNAs: Mechanisms, Functions and Progress
239 -- 245Paul Graves, Yan Zeng. Biogenesis of Mammalian MicroRNAs: A Global View
246 -- 253Yu Li, Kris V. Kowdley. MicroRNAs in Common Human Diseases
254 -- 263Paula Helena Reyes-Herrera, Elisa Ficarra. One Decade of Development and Evolution of MicroRNA Target Prediction Algorithms
264 -- 275Jiandong Ding, Shuigeng Zhou, Jihong Guan. Finding MicroRNA Targets in Plants: Current Status and Perspectives
276 -- 284Wuju Li, Xiaomin Ying, Qixuan Lu, Linxi Chen. Predicting sRNAs and Their Targets in Bacteria
285 -- 294Cord F. Stäehler, Andreas Keller, Petra Leidinger, Christina Backes, Anoop Chandran, Jöerg Wischhusen, Benjamin Meder, Eckart Meese. Whole miRNome-wide Differential Co-expression of MicroRNAs
295 -- 301Samantha F. Kornfeld, Kyle K. Biggar, Kenneth B. Storey. Differential Expression of Mature MicroRNAs Involved in Muscle Maintenance of Hibernating Little Brown Bats, Myotis lucifugus: A Model of Muscle Atrophy Resistance
302 -- 309Kyle K. Biggar, Samantha F. Kornfeld, Yulia Maistrovski, Kenneth B. Storey. MicroRNA Regulation in Extreme Environments: Differential Expression of MicroRNAs in the Intertidal Snail Littorina littorea During Extended Periods of Freezing and Anoxia
310 -- 316Malay Bhattacharyya, Manali Das, Sanghamitra Bandyopadhyay. miRT: A Database of Validated Transcription Start Sites of Human MicroRNAs

Volume 10, Issue 4

175 -- 180Zhang Zhang, Jun Yu. The Pendulum Model for Genome Compositional Dynamics: from the Four Nucleotides to the Twenty Amino Acids
181 -- 185Leroy Hood, Qiang Tian. Systems Approaches to Biology and Disease Enable Translational Systems Medicine
186 -- 196Hao Wu, Hongzhu Qu, Ning Wan, Zhang Zhang, Songnian Hu, Jun Yu. Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition
197 -- 207Gea Guerriero. Putative Chitin Synthases from Branchiostoma floridae Show Extracellular Matrix-related Domains and Mosaic Structures
208 -- 216Arunabha Chakrabarti, Debashis Mukhopadhyay. Novel Adaptors of Amyloid Precursor Protein Intracellular Domain and Their Functional Implications
217 -- 225Muthukumarasamy Uthaya Kumar, Bowdadu Benazir, Sanjeev Patra, Marthandan Kirti Vaishnavi, Manickam Gurusaran, Kanagarajan Sureka, Jeyaraman Jeyakanthan, Kanagaraj Sekar. Homepeptide Repeats: Implications for Protein Structure, Function and Evolution
226 -- 229Kai Willadsen, Nurul Mohamad, Mikael Bodén. NSort/DB: An Intranuclear Compartment Protein Database
230 -- 236Yanjiao Qi, Nengzhi Jin, Duiyuan Ai. Wavelet Analysis of DNA Walks on the Human and Chimpanzee MAGE/CSAG-palindromes

Volume 10, Issue 3

123 -- 126Jun Yu. Life on Two Tracks
127 -- 135Nicolas Tchitchek, José Felipe Golib Dzib, Brice Targat, Sebastian Noth, Arndt Benecke, Annick Lesne. CDS: A Fold-change Based Statistical Test for Concomitant Identification of Distinctness and Similarity in Gene Expression Analysis
136 -- 141Xiaosheng Wang. Microarray Analysis of Ageing-related Signatures and Their Expression in Tumors Based on a Computational Biology Approach
142 -- 152Fadi Towfic, Shakti Gupta, Vasant Honavar, Shankar Subramaniam. B-cell Ligand Processing Pathways Detected by Large-scale Comparative Analysis
153 -- 157Shishan Deng, Baoqian Jing, Tianyong Xing, Lingmi Hou, Zhengwei Yang. Overexpression of Annexin A2 Is Associated with Abnormal Ubiquitination in Breast Cancer
158 -- 165Jovana J. Kovacevic. Computational Analysis of Position-dependent Disorder Content in DisProt Database
166 -- 173Lei Zhang, Fengchun Tian, Shiyuan Wang. A Modified Statistically Optimal Null Filter Method for Recognizing Protein-coding Regions

Volume 10, Issue 2

55 -- 57Jun Yu. Challenges to the Common Dogma
58 -- 73Bilal Wajid, Erchin Serpedin. Review of General Algorithmic Features for Genome Assemblers for Next Generation Sequencers
74 -- 81Peng Cui, Wanfei Liu, YuHui Zhao, Qiang Lin, Feng Ding, Chengqi Xin, Jianing Geng, Shuhui Song, Fanglin Sun, Songnian Hu, Jun Yu. The Association Between H3K4me3 and Antisense Transcription
82 -- 93Peng Cui, Wanfei Liu, YuHui Zhao, Qiang Lin, Daoyong Zhang, Feng Ding, Chengqi Xin, Zhang Zhang, Shuhui Song, Fanglin Sun, Jun Yu, Songnian Hu. Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis
94 -- 106Mingming Xin, Xiangfeng Wang, Huiru Peng, Yingyin Yao, Chaojie Xie, Yao Han, Zhongfu Ni, Qixin Sun. Transcriptome Comparison of Susceptible and Resistant Wheat in Response to Powdery Mildew Infection
107 -- 113Subhash J. Jakhesara, Viral B. Ahir, Ketan B. Padiya, Prakash G. Koringa, Dharamshibhai N. Rank, Chaitanya G. Joshi. Tissue-specific Temporal Exome Capture Revealed Muscle-specific Genes and SNPs in Indian Buffalo (Bubalus bubalis)
114 -- 121Michael Bao, Miguel Cervantes-Cervantes, Ling Zhong, Jason T. L. Wang. Searching for Non-coding RNAs in Genomic Sequences Using ncRNAscout

Volume 10, Issue 1

1 -- 3Jun Yu. Genomics, Proteomics & Bioinformatics (GPB) Has a New Start - Open Access
4 -- 10Peng Cui, Feng Ding, Qiang Lin, Lingfang Zhang, Ang Li, Zhang Zhang, Songnian Hu, Jun Yu. Distinct Contributions of Replication and Transcription to Mutation Rate Variation of Human Genomes
11 -- 22Peng Cui, Qiang Lin, Feng Ding, Songnian Hu, Jun Yu. The Transcript-centric Mutations in Human Genomes
23 -- 34Lin Hua, Hui Lin, Dongguo Li, Lin Li, Zhicheng Liu. Mining Functional Gene Modules Linked with Rheumatoid Arthritis Using a SNP-SNP Network
35 -- 43Muhammad Sulaman Nawaz, Sajid Rashid. MotViz: A Tool for Sequence Motif Prediction in Parallel to Structural Visualization and Analyses
44 -- 50Dheeraj Ravella, Muthukumarasamy Uthaya Kumar, Durairaj Sherlin, Mani Shankar, Marthandan Kirti Vaishnavi, Kanagaraj Sekar. SMS 2.0: An Updated Database to Study the Structural Plasticity of Short Peptide Fragments in Non-redundant Proteins
51 -- 54Xiaoli Tang, Libin Deng, Dake Zhang, Jiari Lin, Yi Wei, Qinqin Zhou, Xiang Li, Guilin Li, Shangdong Liang. Gene2DGE: A Perl Package for Gene Model Renewal with Digital Gene Expression Data