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    Journal: Genomics, Proteomics & Bioinformatics

    Volume 4, Issue 4

    203 -- 211Xiao-Qian Zhao, Jian-Fei Hu, Jun Yu. Comparative Analysis of Eubacterial DNA Polymerase III Alpha Subunits
    212 -- 229Sebastian Noth, Guillaume Brysbaert, François-Xavier Pellay, Arndt Benecke. High-Sensitivity Transcriptome Data Structure and Implications for Analysis and Biologic Interpretation
    230 -- 237T. Shashi Rekha, Chanchal K. Mitra. Comparative Analysis of Splice Site Regions by Information Content
    238 -- 244Toshihide Ono, Haretsugu Hishigaki. Prediction of GPCR-G Protein Coupling Specificity Using Features of Sequences and Biological Functions
    245 -- 252Xiao-Gang Ruan, Jin-Lian Wang, Jian-Geng Li. A Network Partition Algorithm for Mining Gene Functional Modules of Colon Cancer from DNA Microarray Data
    253 -- 258Sudipto Saha, Jyoti Zack, Balvinder Singh, G. P. S. Raghava. VGIchan: Prediction and Classification of Voltage-Gated Ion Channels
    259 -- 263Zhang Zhang, Jun Li, Xiao-Qian Zhao, Jun Wang, Gane Ka-Shu Wong, Jun Yu. KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging

    Volume 4, Issue 3

    137 -- 144Asad Jan, Setsuko Komatsu. Functional Characterization of Gibberellin-Regulated Genes in Rice Using Microarray System
    145 -- 155Ying Shi, Ling Chen, Lance A. Liotta, Hong-Hui Wan, Griffin P. Rodgers. Glia Maturation Factor Gamma (GMFG): A Cytokine-Responsive Protein During Hematopoietic Lineage Development and Its Functional Genomics Analysis
    156 -- 164Reiko Hayashi, Takako Arauchi, Moe Tategu, Yuya Goto, Kenichi Yoshida. A Combined Computational and Experimental Study on the Structure-Regulation Relationships of Putative Mammalian DNA Replication Initiator GINS
    165 -- 172Shi-Shan Deng, Tian-Yong Xing, Hong-Ying Zhou, Ruo-Hong Xiong, You-Guang Lu, Bin Wen, Shang-Qing Liu, Hui-Jun Yang. Comparative Proteome Analysis of Breast Cancer and Adjacent Normal Breast Tissues in Human
    173 -- 181Zhang Zhang, Jun Yu. Evaluation of Six Methods for Estimating Synonymous and Nonsynonymous Substitution Rates
    182 -- 188Marcelo M. Brandão, Karina L. Silva-Brandão, Fernando F. Costa, Sara T. O. Saad. Phylogenetic Analysis of RhoGAP Domain-Containing Proteins
    189 -- 195D. Ashok Reddy, Chanchal K. Mitra. Comparative Analysis of Transcription Start Sites Using Mutual Information
    196 -- 202Stanislav O. Zakharkin, Kyoungmi Kim, Alfred A. Bartolucci, Grier P. Page, David B. Allison. Optimal Allocation of Replicates for Measurement Evaluation Studies

    Volume 4, Issue 2

    67 -- 79Jiang Qian, Jimmy J. Lin, Donald J. Zack. Characterization of Binding Sites of Eukaryotic Transcription Factors
    80 -- 89Thanigaimani Rajarathinam, Yen-Han Lin. Topological Properties of Protein-Protein and Metabolic Interaction Networks of Drosophila melanogaster
    90 -- 109Sebastian Noth, Guillaume Brysbaert, Arndt Benecke. Normalization Using Weighted Negative Second Order Exponential Error Functions (NeONORM) Provides Robustness Against Asymmetries in Comparative Transcriptome Profiles and Avoids False Calls
    110 -- 119Yi-Jing Shen, Shu-Guang Huang. Improve Survival Prediction Using Principal Components of Gene Expression Data
    120 -- 133George K. Acquaah-Mensah, Sonia M. Leach, Chittibabu Guda. Predicting the Subcellular Localization of Human Proteins Using Machine Learning and Exploratory Data Analysis

    Volume 4, Issue 1

    1 -- 9Taiho Kambe, Tomoyuki Suzuki, Masaya Nagao, Yuko Yamaguchi-Iwai. Sequence Similarity and Functional Relationship Among Eukaryotic ZIP and CDF Transporters
    10 -- 17Chun-Hong Zhao, Qi-Fu Li, Yan Zhao, Jing-Wen Niu, Zhi-Xing Li, Jin-An Chen. Changes of Nuclear Matrix Proteins Following the Differentiation of Human Osteosarcoma MG-63 Cells
    18 -- 25Neng-Sheng Ye, Rong-Li Zhang, Yan-Feng Zhao, Xue Feng, Yi-Ming Wang, Guo-An Luo. Effect of 5-azacytidine on the Protein Expression of Porcine Bone Marrow Mesenchymal Stem Cells in vitro
    26 -- 33Md. Salimullah, Masaki Mori, Koichi Nishigaki. High-throughput Three-dimensional Gel Electrophoresis for Versatile Utilities: A Stacked Slice-gel System for Separation and Reactions (4SR)
    34 -- 41Jun Yang, Yi-Li Wang, Lü-Sheng Si. Predicting the Nuclear Localization Signals of 107 Types of HPV L1 Proteins by Bioinformatic Analysis
    42 -- 47Sudipto Saha, G. P. S. Raghava. VICMpred: An SVM-based Method for the Prediction of Functional Proteins of Gram-negative Bacteria Using Amino Acid Patterns and Composition
    48 -- 55Evangelia Petsalaki, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas. PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization
    56 -- 60Axel Mosig, Katrin Sameith, Peter F. Stadler. Fragrep: An Efficient Search Tool for Fragmented Patterns in Genomic Sequences
    61 -- 66Jing-Fa Liu, Wen-Qi Huang. A Quasi-physical Algorithm for the Structure Optimization in an Off-lattice Protein Model
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