Journal: IJBRA

Volume 1, Issue 4

363 -- 388Ferdinando Cicalese, Peter Damaschke, Ugo Vaccaro. Optimal group testing algorithms with interval queries and their application to splice site detection
389 -- 398Israel Mark Martínez-Pérez, Gong Zhang, Zoya Ignatova, Karl-Heinz Zimmermann. Biomolecular autonomous solution of the Hamiltonian path problem via hairpin formation
399 -- 413Yulan Liang, Arpad Kelemen. Temporal gene expression classification with regularised neural network
414 -- 419Yingshu Li, My T. Thai, Zhen Liu, Weili Wu. Protein-protein interaction and group testing in bipartite graphs
420 -- 428Wei-Mou Zheng. Protein secondary structure prediction by combining hidden Markov models and sliding window scores
429 -- 446Osamu Maruyama, Akiko Matsuda, Satoru Kuhara. Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides
447 -- 460Xiaohua Hu, Illhoi Yoo, Xiaodan Zhang, Payal Nanavati, Debjit Das. Wavelet transformation and cluster ensemble for gene expression analysis
461 -- 473Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani. Experimental analysis of a new algorithm for partial haplotype completion

Volume 1, Issue 3

249 -- 260Jingwu He, Kelly Westbrooks, Alexander Zelikovsky. Linear reduction method for predictive and informative tag SNP selection
261 -- 272Bin Zhang, Steve Horvath. Ridge regression based hybrid genetic algorithms for multi-locus quantitative trait mapping
273 -- 291Zheng Liu, James Borneman, Tao Jiang. A software system for gene sequence database construction based on fast approximate string matching
292 -- 304Yair Horesh, Ron Unger. A bottom-up clustering algorithm to detect ncRNA molecules with a common secondary structure
305 -- 318Juan Miguel García-Gómez, José-Miguel Benedí, Javier Vicente, Montserrat Robles. Corpus based learning of stochastic, context-free grammars combined with Hidden Markov Models for tRNA modelling
319 -- 334Robert E. Langlois, Alice Diec, Ognjen Perisic, Yang Dai, Hui Lu. Improved protein fold assignment using support vector machines
335 -- 350Trupti Joshi, Yu Chen, Nickolai Alexandrov, Dong Xu. Cellular function prediction and biological pathway discovery in Arabidopsis thaliana using microarray data
351 -- 362Xiaolin Wu, Sorina Dumitrescu, Pravesh Biyani, Qiang Wu. Fast chromosome karyotyping by auction algorithm

Volume 1, Issue 2

145 -- 161Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman. Highly scalable algorithms for robust string barcoding
162 -- 168Ding-Zhu Du, Frank K. Hwang. Identifying d positive clones in the presence of inhibitors
169 -- 182Zhenqiu Liu, Dechang Chen, Ying Xu, Jian Liu. Logistic support vector machines and their application to gene expression data
181 -- 201Alan Wee-Chung Liew, Yonghui Wu, Hong Yan, Mengsu Yang. Effective statistical features for coding and non-coding DNA sequence classification for yeast, C. elegans and human
202 -- 212Derek A. Ruths, Luay Nakhleh. Recombination and phylogeny: effects and detection
213 -- 220Liang Chen, Sharmin Nilufar. A districted neural network for start codon prediction
221 -- 229Dumitru Brinza, Jingwu He, Weidong Mao, Alexander Zelikovsky. Family trio phasing and missing data recovery
230 -- 245Beeta Masoumi, Marcel Turcotte. Simultaneous alignment and structure prediction of three RNA sequences

Volume 1, Issue 1

3 -- 17Wojciech Szpankowski, Wenhui Ren, Lukasz Szpankowski. An optimal DNA segmentation based on the MDL principle
18 -- 30Tianhua Niu, Zhenjun Hu. Dynamic visual data mining: biological sequence analysis and annotation using SeqVISTA
31 -- 50Suman Sundaresh, She-pin Hung, G. Wesley Hatfield, Pierre Baldi. How noisy and replicable are DNA microarray data?
51 -- 62Hyunsoo Kim, Jeff X. Zhou, Herbert C. Morse III, Haesun Park. A three-stage framework for gene expression data analysis by L1-norm support vector regression
63 -- 80Liangjiang Wang, Aidong Zhang, Murali Ramanathan. BioStar models of clinical and genomic data for biomedical data warehouse design
81 -- 101Xiaohua Hu. Mining and analysing scale-free proteinprotein interaction network
102 -- 120Kayvan Najarian, Krishna Gopalakrishnan, R. H. Zadeh. Signal processing for functional analysis of protein mutants
121 -- 143Abdur Rahman, Albert Y. Zomaya. An overview of protein-folding techniques: issues and perspectives