Journal: I. J. Computational Biology and Drug Design

Volume 7, Issue 4

295 -- 318Monika Singh, Harish Jangra, P. V. Bharatam, A. K. Madan. Detour matrix-based adjacent path eccentric distance sum indices for QSAR/QSPR. Part I: development and evaluation
319 -- 340Monika Singh, Harish Dureja, A. K. Madan. Detour matrix-based adjacent path eccentric distance sum indices for (Q)SAR/QSPR. Part II: application in development of models for COX-2 inhibitory activity of indomethacin derivatives
341 -- 357Vo Hong Thanh, Roberto Zunino. Adaptive tree-based search for stochastic simulation algorithm
358 -- 368Maryam Pourkamali Anaraki, Mehdi Sadeghi. Efficient fast heuristic algorithms for minimum error correction haplotyping from SNP fragments
369 -- 383Timothy G. Lilburn, Hong Cai, Jianying Gu, Zhan Zhou, Yufeng Wang. Exploring systems affected by the heat shock response in Plasmodium falciparum via protein association networks
384 -- 393Ramkrishna Mitra, Zhongming Zhao. The oncogenic and prognostic potential of eight microRNAs identified by a synergetic regulatory network approach in lung cancer

Volume 7, Issue 2/3

102 -- 112Yan Guo, Amma Bosompem, Xue Zhong, Travis Clark, Yu Shyr, Annette S. Kim. A comparison of microRNA sequencing reproducibility and noise reduction using mirVana and TRIzol isolation methods
113 -- 129Reka K. Kelemen, Gengen F. He, Hannah L. Woo, Thomas Lane, Caroline Rempe, Jun Wang, Ian A. Cockburn, Rogerio Amino, Vitaly V. Ganusov, Michael W. Berry. Classification of T cell movement tracks allows for prediction of cell function
130 -- 145Vishal N. Koparde, Ricky S. Adkins, Jennifer M. Fettweis, Myrna G. Serrano, Gregory A. Buck, Mark A. Reimers, Nihar U. Sheth. BOTUX: Bayesian-like operational taxonomic unit examiner
146 -- 156Wei Xiong, Luyu Xie, Shuigeng Zhou, Hui Liu, Jihong Guan. The centrality of cancer proteins in human protein-protein interaction network: a revisit
157 -- 167Qi Li, Soujanya Siddavaram Ananta. Localisation of Drosophila embryos using active contours in channel spaces
168 -- 182Ramanandan Prabhakaran, Shivapriya Chithambaram, Xuhua Xia. Aeromonas phages encode tRNAs for their overused codons
183 -- 194Kai Wang, Charles A. Phillips, Gary L. Rogers, Fredrik Barrenäs, Mikael Benson, Michael A. Langston. Differential Shannon entropy and differential coefficient of variation: alternatives and augmentations to differential expression in the search for disease-related genes
195 -- 213Xinjun Zhang, Dharanesh Gangaiah, Robert S. Munson Jr., Stanley M. Spinola, Yunlong Liu. Correcting imbalanced reads coverage in bacterial transcriptome sequencing with extreme deep coverage
214 -- 224Wei Chen, Yongmei Cheng, Shao-Wu Zhang, Quan Pan. Supervised method for periodontitis phenotypes prediction based on microbial composition using 16S rRNA sequences
225 -- 258Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler. Generic strategies for chemical space exploration
259 -- 277S. Buhl, B. Neumann, S. C. Schäfer, A. L. Severing. Automatic cell segmentation in strongly agglomerated cell networks for different cell types
278 -- 294Shravan Kumar Gunda, Sandeep Kumar Mulukala Narasimha, Mahmood Shaik. lck kinase inhibitor studies: a 3D QSAR approach towards designing new drugs from flavonoid derivatives

Volume 7, Issue 1

1 -- 30Rakesh Kumar Marwaha, A. K. Madan. Fourth generation detour matrix-based topological descriptors for QSAR/QSPR - Part-2: application in development of models for prediction of biological activity
31 -- 44Faisal Saeed, Naomie Salim, Ammar Abdo. Combining multiple clusterings of chemical structures using cluster-based similarity partitioning algorithm
45 -- 60Jasjit K. Banwait, Hesham H. Ali, Dhundy Bastola. Optimisation of miRNA-mRNA relationship prediction using biological features
61 -- 79Dragana Miljkovic, Matjaz Depolli, Tjasa Stare, Igor Mozetic, Marko Petek, Kristina Gruden, Nada Lavrac. Plant defence model revisions through iterative minimisation of constraint violations
80 -- 95Jamal Shamsara. A study on druggability of MIA as a promising approach for inhibition of metastasis