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    Journal: IJDMB

    Volume 1, Issue 4

    315 -- 336Paola Lecca. Simulating the cellular passive transport of glucose using a time-dependent extension of Gillespie algorithm for stochastic pi-calculus
    337 -- 351Roger A. Craig, Li Liao. Transductive learning with EM algorithm to classify proteins based on phylogenetic profiles
    352 -- 371Alessandro Dal Palù, Enrico Pontelli, Jing He, Yonggang Lu. A Constraint Logic Programming approach to associate 1D and 3D structural components for large protein complexes
    372 -- 388Ket Fah Chong, Hon Wai Leong. A Merge-Decoupling Dead End Elimination algorithm for protein side-chain conformation
    389 -- 407Lawrence H. Reeve, Hyoil Han, Ari D. Brooks. Biomedical text summarisation using concept chains

    Volume 1, Issue 3

    217 -- 240Shuqin Zhang, Wai-Ki Ching, Michael K. Ng, Tatsuya Akutsu. Simulation study in Probabilistic Boolean Network models for genetic regulatory networks
    241 -- 247Qiaofeng Yang, Stefano Lonardi. A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks
    248 -- 269Minh Ngoc Nguyen 0002, Jagath C. Rajapakse. Prediction of Protein Secondary Structure with two-stage multi-class SVMs
    270 -- 285Bo Jin, Yan-Qing Zhang, Binghe Wang. Granular Kernel Trees with parallel Genetic Algorithms for drug activity comparisons
    286 -- 313Uros Midic, A. Keith Dunker, Zoran Obradovic. Exploring alternative knowledge representations for protein secondary-structure prediction

    Volume 1, Issue 2

    111 -- 137Yun Zheng, Chee Keong Kwoh. Dynamic algorithm for inferring qualitative models of Gene Regulatory Networks
    138 -- 149Xiaoli Li, Soon-Heng Tan, See-Kiong Ng. Improving domain-based protein interaction prediction using biologically-significant negative dataset
    150 -- 161Hong Yan, Tuan D. Pham. Spectral similarity for analysis of DNA microarray time-series data
    162 -- 177Chris H. Q. Ding, Xiaofeng He, Hui Xiong, Hanchuan Peng, Stephen R. Holbrook. Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques
    178 -- 200Sun Kim, Jason Lee. BAG: a graph theoretic sequence clustering algorithm
    201 -- 215Henry C. M. Leung, Francis Y. L. Chin. An efficient motif discovery algorithm with unknown motif length and number of binding sites

    Volume 1, Issue 1

    3 -- 18Yuanchen He, Yuchun Tang, Yan-Qing Zhang, Rajshekhar Sunderraman. Adaptive Fuzzy Association Rule mining for effective decision support in biomedical applications
    19 -- 56Bill Andreopoulos, Aijun An, Xiaogang Wang. Bi-level clustering of mixed categorical and numerical biomedical data
    57 -- 76Jason T. L. Wang, Xiaoming Wu. Kernel design for RNA classification using Support Vector Machines
    77 -- 87Rui Yamaguchi, Tomoyuki Higuchi. State-space approach with the maximum likelihood principle to identify the system generating time-course gene expression data of yeast
    88 -- 110Ying Liu, Shamkant B. Navathe, Alex Pivoshenko, Venu Dasigi, Ray Dingledine, Brian J. Ciliax. Text analysis of MEDLINE for discovering functional relationships among genes: evaluation of keyword extraction weighting schemes
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