Journal: IJDMB

Volume 13, Issue 4

321 -- 337Xiaofeng Song, Lizhen Hu, Ping Han, Xuejiang Guo, Jiahao Sha. In silico identification and functional annotation of yeast E3 ubiquitin ligase Rsp5 substrates
338 -- 359Benjamin Ulfenborg, Karin Klinga-Levan, Björn Olsson. Genome-wide discovery of miRNAs using ensembles of machine learning algorithms and logistic regression
360 -- 377Fatema Tuz Zohora, M. Sohel Rahman. Application of consensus string matching in the diagnosis of allelic heterogeneity involving transposition mutation
378 -- 394Yan Wang, Tingting He, Xingpeng Jiang, Jie Yuan, Xianjun Shen. Weighted fusion regularisation and predicting microbial interactions with vector autoregressive model
395 -- 411Aron Henriksson. Learning multiple distributed prototypes of semantic categories for named entity recognition

Volume 13, Issue 3

211 -- 224Watshara Shoombuatong, Panuwat Mekha, Jeerayut Chaijaruwanich. Sequence based human leukocyte antigen gene prediction using informative physicochemical properties
225 -- 247Wael Zakaria Abd Allah, Yasser Kotb, Fayed F. M. Ghaleb. PMCR-Miner: parallel maximal confident association rules miner algorithm for microarray data set
248 -- 265C. Gunavathi, K. Premalatha. Cuckoo search optimisation for feature selection in cancer classification: a new approach
266 -- 288Nadia Ben Nsira, Thierry Lecroq, Mourad Elloumi. A fast Boyer-Moore type pattern matching algorithm for highly similar sequences
289 -- 319Stephan Richter 0002, Ingo Fetzer, Martin Thullner, Florian Centler, Peter Dittrich. Towards rule-based metabolic databases: a requirement analysis based on KEGG

Volume 13, Issue 2

103 -- 121Fei Han, Shanxiu Yang, Jian Guan. An effective hybrid approach of gene selection and classification for microarray data based on clustering and particle swarm optimisation
122 -- 140Yuan Zhang, Yue Cheng, Liang Ge, Nan Du, Kebin Jia, Aidong Zhang. A graph-based integrative method of detecting consistent protein functional modules from multiple data sources
141 -- 157Tom Johnsten, Laura Fain, Leanna Fain, Ryan G. Benton, Ethan Butler, Lewis Pannell, Ming Tan. Exploiting multi-layered vector spaces for signal peptide detection
158 -- 170Shuliang Wang, Yiping Zhao. Analysing large biological data sets with an improved algorithm for MIC
171 -- 180Ali Katanforoush, Ehsan Mahdavi. miRNA target recognition using features of suboptimal alignments
181 -- 196Limin Li, Shuqin Zhang. Orthogonal projection correction for confounders in biological data classification
197 -- 210Maryam Farhadian, Hossein Mahjub, Abbas Moghimbeigi, Paulo J. G. Lisboa, Jalal Poorolajal, Muharram Mansoorizadeh. Wavelet-based gene selection method for survival prediction in diffuse large B-cell lymphomas patients

Volume 13, Issue 1

1 -- 12Pan Zhu, Yanhong Zhou, Libin Zhang, Chuang Ma. DNA sequence and structure properties analysis reveals similarities and differences to promoters of stress responsive genes in Arabidopsis thaliana
13 -- 30Isra Al-Turaiki, Ghada Badr, Hassan Mathkour. TrieAMD: a scalable and efficient apriori motif discovery approach
31 -- 49Nilgun Ferhatosmanoglu, Theodore T. Allen, Ümit V. Çatalyürek. Mitigating bias in planning two-colour microarray experiments
50 -- 62Ying Shen, Lin Zhang. Gene function prediction with knowledge from gene ontology
63 -- 74Suping Deng, De-Shuang Huang. An integrated strategy for functional analysis of microbial communities based on gene ontology and 16S rRNA gene
75 -- 83Guangyu Cui, Byungmin Kim, Saud Alguwaizani, Kyungsook Han. Assessing protein-protein interactions based on the semantic similarity of interacting proteins
84 -- 101Dengju Yao, Jing Yang, Xiaojuan Zhan, Xiaorong Zhan, Zhiqiang Xie. A novel random forests-based feature selection method for microarray expression data analysis