Journal: IJDMB

Volume 3, Issue 4

363 -- 364Leif E. Peterson, Xue-wen Chen. Editorial
365 -- 381Li Chen, Jianhua Xuan, Chen Wang, Yue Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman. Biomarker identification by knowledge-driven multilevel ICA and motif analysis
382 -- 397Leif E. Peterson, Matthew A. Coleman. Logistic ensembles of Random Spherical Linear Oracles for microarray classification
398 -- 408Zhenqiu Liu, Feng Jiang. Gene identification and survival prediction with L::p:: Cox regression and novel similarity measure
409 -- 430Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Jason M. Gilmore, William R. Cannon, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, H. Steven Wiley. An analysis pipeline for the inference of protein-protein interaction networks
431 -- 453Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo. A technique to search for functional similarities in protein-protein interaction networks
454 -- 468Feng Cui, Kriti Mukhopadhyay, Won-Bin Young, Robert L. Jernigan, Zhijun Wu. Refinement of under-determined loops of Human Prion Protein by database-derived distance constraints
469 -- 482Xiaoyong Sun, Di Wu, Robert L. Jernigan, Zhijun Wu. PRTAD: A database for protein residue torsion angle distributions

Volume 3, Issue 3

229 -- 259Kevin Y. Yip, Lin Cheung, David W. Cheung, Liping Jing, Michael K. Ng. A semi-supervised approach to projected clustering with applications to microarray data
260 -- 279Dietmar H. Dorr, Anne M. Denton. Clustering sequences by overlap
280 -- 298Antonio Ruiz, Olcay Sertel, Manuel Ujaldon, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan. Stroma classification for neuroblastoma on graphics processors
299 -- 313Yutaka Sasaki, Brian Rea, Sophia Ananiadou. Clinical text classification under the Open and Closed Topic Assumptions
314 -- 332Quan Wen, Kate Luby-Phelps, Jean Gao. Tracking multiple interacting subcellular structure by sequential Monte Carlo method
333 -- 345Young-Rae Cho, Aidong Zhang, Xian Xu. Semantic similarity based feature extraction from microarray expression data
346 -- 361Kamal Al-Nasr, Jing He. An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent

Volume 3, Issue 2

105 -- 123Kazuhiro Seki, Javed Mostafa. Discovering implicit associations among critical biological entities
124 -- 144Bin Song, Padmavati Sridhar, Tamer Kahveci, Sanjay Ranka. Double iterative optimisation for metabolic network-based drug target identification
145 -- 159Miew Keen Choong, David Levy, Hong Yan. Study of microarray time series data based on Forward-Backward Linear Prediction and Singular Value Decomposition
160 -- 176Arnaud Fontaine, Hélène Touzet. Computational identification of protein-coding sequences by comparative analysis
177 -- 191Lei Yu. Feature cluster selection for high-throughput data analysis
192 -- 204Feng Yue, Jijun Tang. A space-efficient algorithm for three sequence alignment and ancestor inference
205 -- 227Frank DiMaio, Ameet Soni, George N. Phillips, Jude W. Shavlik. Spherical-harmonic decomposition for molecular recognition in electron-density maps

Volume 3, Issue 1

3 -- 22Kuan-Ming Lin, Jaewoo Kang, Hanjun Shin, Jusang Lee. A cube framework for incorporating inter-gene information into biological data mining
23 -- 39Yin-Fu Huang, Yi-Chao Jhan, Sing-Wu Liou. Finding new Core Promoter Elements using backward-looking strategies
40 -- 54Mathew Palakal, Pavithra Naidu. An on demand data integration model for biological databases
55 -- 67Yasir Arafat, Joarder Kamruzzaman, Gour C. Karmakar, Juan Fernández-Recio. Predicting protein - protein interfaces as clusters of Optimal Docking Area points
68 -- 84Shi-Hua Zhang, Hong-wei Liu, Xue-Mei Ning, Xiang-Sun Zhang. A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks
85 -- 103Xue-Qiang Zeng, Guo-Zheng Li, Gengfeng Wu, Jack Y. Yang, Mary Qu Yang. Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes