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    Journal: IJDMB

    Volume 4, Issue 6

    617 -- 638Haixia Li, R. Krishna Murthy Karuturi. Significance analysis and improved discovery of disease-specific Differentially Co-expressed Gene Sets in microarray data
    639 -- 655Hui Liu, Shuigeng Zhou, Jihong Guan. Detecting microarray data supported microRNA-mRNA interactions
    656 -- 674Dietmar H. Dorr, Anne M. Denton. Generalised Sequence Signatures through symbolic clustering
    675 -- 700Niina Haiminen, Heikki Mannila. Evaluation of BIC and Cross Validation for model selection on sequence segmentations
    701 -- 721Levent Carkacioglu, Rengül Çetin-Atalay, Özlen Konu, Volkan Atalay, Tolga Can. Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering
    722 -- 734Peng Chen, Chunmei Liu, Legand L. Burge III, Mahmood Mohammad, William M. Southerland, Clay Gloster. Prediction of inter-residue contact clusters from hydrophobic cores
    735 -- 754Satu Jääskeläinen, Pentti Riikonen, Tapio Salakoski, Mauno Vihinen. Accuracy of protein hydropathy predictions

    Volume 4, Issue 5

    487 -- 504Saira Ali Kazmi, Yoo Ah Kim, Dong-Guk Shin. Meta analysis algorithms for microarray gene expression data using Gene Regulatory Networks
    505 -- 519Baikang Pei, David W. Rowe, Dong-Guk Shin. Learning Bayesian networks with integration of indirect prior knowledge
    520 -- 534Zheng Chen, Jian Tang. Using Gene Ontology to enhance effectiveness of similarity measures for microarray data
    535 -- 552Rachel Caldwell, Yan-Xia Lin, Ren Zhang. Assessment of length distributions between non-coding and coding sequences amongst two model organisms
    553 -- 570Jamil Ahmad, Olivier Roux. Invariance kernel of Biological Regulatory Networks
    571 -- 587H. Yang, R. Sunderraman, H. Tian. bcnQL: A query language for biochemical networks
    588 -- 599Hyojin Kang, Eunkyoo Oh, Giltsu Choi, Doheon Lee. Genome-wide DNA-binding specificity of PIL5, an Arabidopsis basic Helix-Loop-Helix (bHLH) transcription factor
    600 -- 615Liang Yu, Lin Gao, Peng-Gang Sun. A hybrid clustering algorithm for identifying modules in Protein - Protein Interaction networks

    Volume 4, Issue 4

    357 -- 376Gyan Prakash Srivastava, Jing Qiu, Dong Xu. Genome-wide functional annotation by integrating multiple microarray datasets using meta-analysis
    377 -- 394Vinhthuy Phan, Sudip Saha, Ashutosh Pandey, Tit-Yee Wong. Synthetic gene design with a large number of hidden stops
    395 -- 410Alex Rudniy, Min Song, James Geller. Detecting duplicate biological entities using Shortest Path Edit Distance
    411 -- 430Jing Xia, Doina Caragea, Susan J. Brown. Prediction of alternatively spliced exons using Support Vector Machines
    431 -- 451Jeffrey D. Leblond, Andrew D. Lasiter, Cen Li, Ramiro Logares, Karin Rengefors, Terence J. Evens. A data mining approach to dinoflagellate clustering according to sterol composition: correlations with evolutionary history
    452 -- 470Seak Fei Lei, Jun Huan. Towards site-based protein functional annotations
    471 -- 485Md. Nurul Haque Mollah, Shinto Eguchi. Robust QTL analysis by minimum beta-divergence method

    Volume 4, Issue 3

    241 -- 255Jiao Li, Xiaoyan Zhu, Jake Yue Chen. Discovering breast cancer drug candidates from biomedical literature
    256 -- 280Sérgio Manuel Serra da Cruz, Vanessa Batista, Edno Silva, Frederico Tosta, Clarissa Vilela, Rafael R. C. Cuadrat, Diogo A. Tschoeke, Alberto M. R. Dávila, Maria Luiza Machado Campos, Marta Mattoso. Detecting distant homologies on protozoans metabolic pathways using scientific workflows
    281 -- 299Márcio Dorn, Osmar Norberto de Souza. Mining the Protein Data Bank with CReF to predict approximate 3-D structures of polypeptides
    300 -- 315Antonina Mitrofanova, Bhubaneswar (Bud) Mishra. On a novel coalescent model for genome-wide evolution of Copy Number Variations
    316 -- 330Bernard Chen, Jieyue He, Stephen Pellicer, Yi Pan. Using Hybrid Hierarchical K-means (HHK) clustering algorithm for protein sequence motif Super-Rule-Tree (SRT) structure construction
    331 -- 347Wai-Ki Ching, Limin Li, Nam-Kiu Tsing, Ching-Wan Tai, Tuen-Wai Ng, Alice S. Wong, Kwai-Wa Cheng. A weighted Local Least Squares Imputation method for missing value estimation in microarray gene expression data
    348 -- 355Yi Zhang 0005, Dingding Wang, Tao Li. LIBGS: A MATLAB software package for gene selection

    Volume 4, Issue 2

    123 -- 141Mingzhou (Joe) Song, Robert M. Haralick, Stéphane Boissinot. Efficient and exact maximum likelihood quantisation of genomic features using dynamic programming
    142 -- 157Huilin Xiong, Ya Zhang, Xue-wen Chen, Jiangsheng Yu. Cross-platform microarray data integration using the Normalised Linear Transform
    158 -- 174Mahmood A. Mahdavi. Medical informatics: transition from data acquisition to data analysis by means of bioinformatics tools and resources
    175 -- 190Sumeet Dua, Praveen C. Kidambi. Protein structural classification using orthogonal transformation and class-association rules
    191 -- 210Andrew Secker, Matthew N. Davies, Alex Alves Freitas, Edward Clark, Jonathan Timmis, Darren R. Flower. Hierarchical classification of G-Protein-Coupled Receptors with data-driven selection of attributes and classifiers
    211 -- 227Qiwen Dong, Shuigeng Zhou, Xuan Liu. Prediction of protein - protein interactions from primary sequences
    228 -- 240Fengbin Zheng, Xiajiong Shen, Zhengye Fu, Shanshan Zheng, Guangrong Li. Feature selection for genomic data sets through feature clustering

    Volume 4, Issue 1

    1 -- 20Alessandro Dal Palù, Agostino Dovier, Enrico Pontelli. Computing approximate solutions of the protein structure determination problem using global constraints on discrete crystal lattices
    21 -- 43Fadi Towfic, Cornelia Caragea, David C. Gemperline, Drena Dobbs, Vasant Honavar. Struct-NB: predicting protein-RNA binding sites using structural features
    44 -- 59Dongxiao Zhu, Hua Li. Improved Bayesian Network inference using relaxed gene ordering
    60 -- 71Jia Song, Chunmei Liu, Yinglei Song, Junfeng Qu, Gurdeep S. Hura. Alignment of multiple proteins with an ensemble of Hidden Markov Models
    72 -- 90Andrew V. Kossenkov, Michael F. Ochs. Matrix factorisation methods applied in microarray data analysis
    91 -- 108Min Li, Jianxin Wang, Jianer Chen, Zhao Cai, Gang Chen. Identifying the overlapping complexes in protein interaction networks
    109 -- 122Xiajiong Shen, Jun Gu. Integrating flexibility and interactivity in bioinformatics visual programming tools with Focus+Context algorithm
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