Journal: Quant. Biol.

Volume 2, Issue 4

127 -- 141Congmin Zhu, Rui Jiang 0001, Ting Chen 0002. Constructing a Boolean implication network to study the interactions between environmental factors and OTUs
142 -- 150Derek Eidum, Kanishk Asthana, Samir Unni, Michael Deng, Lingchong You. Construction, visualization, and analysis of biological network models in Dynetica
151 -- 156Zhen Xie. Quantitative biology: from genes, cells to networks

Volume 2, Issue 3

85 -- 99Chi Zhang, Sha Cao, Ying Xu. Population dynamics inside cancer biomass driven by repeated hypoxia-reoxygenation cycles
100 -- 109Honglei Liu, Yanda Li, Xiaowo Wang. OP-Synthetic: identification of optimal genetic manipulations for the overproduction of native and non-native metabolites
110 -- 125Chen Jia, Minping Qian, Yu Kang, Daquan Jiang. Modeling stochastic phenotype switching and bet-hedging in bacteria: stochastic nonlinear dynamics and critical state identification

Volume 2, Issue 2

59 -- 70Xuebing Wu, Andrea J. Kriz, Phillip A. Sharp. Target specificity of the CRISPR-Cas9 system
71 -- 79Leying Guan, Qian Yang, Mengting Gu, Liang Chen, Xuegong Zhang. Exon expression QTL (eeQTL) analysis highlights distant genomic variations associated with splicing regulation
80 -- 84Mengyi Sun, Bingyu Yan, Chengkun Wu, Xiaole Shirley Liu. Meeting report on YBPW 2014 (the 3rd Young Bioinformatics PIs Workshop)

Volume 2, Issue 1

1 -- 29Arwen Meister, Chao Du, Ye Henry Li, Wing Hung Wong. Modeling stochastic noise in gene regulatory systems
30 -- 46Guodong Liu, Antonio Marras, Jens Nielsen. The future of genome-scale modeling of yeast through integration of a transcriptional regulatory network
47 -- 53Hong Qian. Fitness and entropy production in a cell population dynamics with epigenetic phenotype switching
54 -- 58Orna Resnekov, Brian Munsky, William S. Hlavacek. Perspective on the q-bio Summer School and Conference: 2007-2014 and beyond