Journal: Quant. Biol.

Volume 4, Issue 4

243 -- 260Zhun Miao, Xuegong Zhang. Differential expression analyses for single-cell RNA-Seq: old questions on new data
261 -- 269Petr Kloucek, Armin von Gunten. On the possibility of identifying human subjects using behavioural complexity analyses
270 -- 282Sebastián Torcida, Paula González, Federico Lotto. A resistant method for landmark-based analysis of individual asymmetry in two dimensions
283 -- 301Jing Qin 0004, Bin Yan, Yaohua Hu, Panwen Wang, Junwen Wang. Applications of integrative OMICs approaches to gene regulation studies
302 -- 309Bingxiang Xu, Zhihua Zhang. Computational inference of physical spatial organization of eukaryotic genomes
310 -- 319Guanghui Zhu, Xing-Ming Zhao, Jun Wu. A survey on biomarker identification based on molecular networks
320 -- 330Yasen Jiao, Pufeng Du. Performance measures in evaluating machine learning based bioinformatics predictors for classifications

Volume 4, Issue 3

149 -- 158Zohreh Baharvand Irannia, Ting Chen. TACO: Taxonomic prediction of unknown OTUs through OTU co-abundance networks
159 -- 176Haiguang Liu, John C. H. Spence. XFEL data analysis for structural biology
177 -- 191Ruchuan Liu, Yuliang Li, Liyu Liu. Single molecule fluorescence spectroscopy for quantitative biological applications
192 -- 206Hongfei Cui, Yingxue Li, Xuegong Zhang. An overview of major metagenomic studies on human microbiomes in health and disease
207 -- 216Jinggong Xiang-Yu, Zongfeng Yang, Kun Tang, HaiPeng Li. Revisiting the false positive rate in detecting recent positive selection
217 -- 225Chao He, Guipeng Li, Diekidel M. Nadhir, Yang Chen, Xiaowo Wang, Michael Q. Zhang. Advances in computational ChIA-PET data analysis
226 -- 239Jinhua Wu, Zewei Luo, Ning Jiang. Design of efficient simplified genomic DNA and bisulfite sequencing in large plant populations
240 -- 241Marc Turcotte. Erratum to: Delineating the respective impacts of stochastic curl- and grad-forces in a family of idealized core genetic commitment circuits

Volume 4, Issue 2

69 -- 83Marc Turcotte. Delineating the respective impacts of stochastic curl- and grad-forces in a family of idealized core genetic commitment circuits
84 -- 91Ze-Gang Wei, Shao-Wu Zhang, Fang Jing. Exploring the interaction patterns among taxa and environments from marine metagenomic data
92 -- 93Xuegong Zhang. Special collection of recent advances in next-generation bioinformatics, part II
94 -- 105Xuan Li, Yi-Meng Kong, Qiong-Yi Zhao, Yuan-Yuan Li, Pei Hao. De novo assembly of transcriptome from next-generation sequencing data
106 -- 114Jing Tu, Na Lu, Mengqin Duan, An Ju, Xiao Sun 0006, Zuhong Lu. Comparison of the experimental methods in haplotype sequencing via next generation sequencing
115 -- 128Jiaxin Wu, Mengmeng Wu, Ting Chen 0006, Rui Jiang 0001. Whole genome sequencing and its applications in medical genetics
129 -- 147Juntao Gao, Xusan Yang, Mohamed Nadhir Djekidel, Yang Wang, Peng Xi, Michael Q. Zhang. Developing bioimaging and quantitative methods to study 3D genome

Volume 4, Issue 1

1 -- 12Amal Katrib, William Hsu, Alex A. T. Bui, Yi Xing. "Radiotranscriptomics": A synergy of imaging and transcriptomics in clinical assessment
13 -- 19Yoshito Hirata, Kai Morino, Taiji Suzuki, Qian Guo 0002, Hiroshi Fukuhara, Kazuyuki Aihara. System identification and parameter estimation in mathematical medicine: examples demonstrated for prostate cancer
20 -- 21Xuegong Zhang. Special collection of recent advances in next-generation bioinformatics
22 -- 35Qiong-Yi Zhao, Jacob Gratten, Restuadi Restuadi, Xuan Li. Mapping and differential expression analysis from short-read RNA-Seq data in model organisms
36 -- 46Chang-Chang Cao, Xiao Sun 0006. Combinatorial pooled sequencing: experiment design and decoding
47 -- 57Ye Yuan, Xinying Ren, Zhen Xie, Xiaowo Wang. A quantitative understanding of microRNA-mediated competing endogenous RNA regulation
58 -- 67Dongfang Wang, Jin Gu. Integrative clustering methods of multi-omics data for molecule-based cancer classifications