Journal: Quant. Biol.

Volume 5, Issue 4

277 -- 279Zhaohui S. Qin. Special collection of bioinformatics in the era of precision medicine
280 -- 290Lu Wang 0004, Lipi R. Acharya, Changxin Bai, Dongxiao Zhu. Transcriptome assembly strategies for precision medicine
291 -- 301Jie Zheng 0001, Huan Li, Qingzhi Liu, Yongqun He. The Ontology of Biological and Clinical Statistics (OBCS)-based statistical method standardization and meta-analysis of host responses to yellow fever vaccines
302 -- 327Saurav Mallik, Zhongming Zhao. Towards integrated oncogenic marker recognition through mutual information-based statistically significant feature extraction: an association rule mining based study on cancer expression and methylation profiles
328 -- 337Sha Cao, Yi Zhou, Yue Wu, Tianci Song, Burair Alsaihati, Ying Xu. Transcription regulation by DNA methylation under stressful conditions in human cancer
338 -- 351Yiyi Liu, Hongyu Zhao. Variable importance-weighted random forests
352 -- 367Jiao Chen, Dongxiao Zhu, Yanni Sun. Cap-seq reveals complicated miRNA transcriptional mechanisms in C. elegans and mouse
368 -- 379Weiming Zhang, Debashis Ghosh. On the use of kernel machines for Mendelian randomization
380 -- 394Varshini Vasudevaraja, Jamie Renbarger, Ridhhi Girish Shah, Garrett Kinnebrew, Murray Korc, Limei Wang, Yang Huo, Enze Liu, Lang Li 0001, Lijun Cheng. PMTDS: a computational method based on genetic interaction networks for Precision Medicine Target-Drug Selection in cancer

Volume 5, Issue 3

203 -- 204Zefeng Wang. PICB: facing the new challenge and opportunity of big data
205 -- 209Qin Yang, Ying Wang, Li Yang. Multifaceted roles of complementary sequences on circRNA formation
210 -- 214Ganlu Hu, Guang-Zhong Wang. Decoding nervous system by single-cell RNA sequencing
215 -- 225Zhijun Han, Gang Wei. Computational tools for Hi-C data analysis
226 -- 235Shiqi Tu, Zhen Shao. An introduction to computational tools for differential binding analysis with ChIP-seq data
236 -- 250Kai Yuan, Ying Zhou, Xumin Ni, Yuchen Wang, Chang Liu, Shuhua Xu. Models, methods and tools for ancestry inference and admixture analysis
251 -- 259Jing-Dong J. Han, Lei Hou, Na Sun, Chi Xu, Joseph McDermott, Dan Wang. The system capacity view of aging and longevity
260 -- 271Yi Xiao, Tiangen Chang, Qingfeng Song, Shuyue Wang, Danny Tholen, Yu Wang, Changpeng Xin, Guangyong Zheng, Honglong Zhao, Xin-Guang Zhu. ePlant for quantitative and predictive plant science research in the big data era - Lay the foundation for the future model guided crop breeding, engineering and agronomy
272 -- 275Zhen Wang, Zefeng Wang, Yixue Li. Strategic planning for national biomedical big data infrastructure in China

Volume 5, Issue 2

111 -- 123Meiyan Wang, Yuanhuan Yu, Jiawei Shao, Boon Chin Heng, Haifeng Ye. Engineering synthetic optogenetic networks for biomedical applications
124 -- 135David J. Menn, Ri-Qi Su, Xiao Wang. Control of synthetic gene networks and its applications
136 -- 142Zeyu Zhang, Xiu-Jie Wang. Current progresses of 3D bioprinting based tissue engineering
143 -- 158Liaofu Luo, Jun Lv. Quantum conformational transition in biological macromolecule
159 -- 172Sai Zhang, Muxuan Liang, Zhongjun Zhou, Chen Zhang, Ning Chen 0002, Ting Chen, Jianyang Zeng. Elastic restricted Boltzmann machines for cancer data analysis
173 -- 182Wei Yu, Yu Wu. A systematic analysis of intrinsic regulators for HIV-1 R5 to X4 phenotypic switch
183 -- 190Mohamed Nadhir Djekidel, Mengjie Wang, Michael Q. Zhang, Juntao Gao. HiC-3DViewer: a new tool to visualize Hi-C data in 3D space
191 -- 198Guanyu Wang. Global quantitative biology can illuminate ontological connections between diseases
199 -- 201Zhirong Sun, Kui Hua, Xuegong Zhang, Feng-Biao Guo, Jian Huang 0004. The 7th National Conference on Bioinformatics and Systems Biology of China

Volume 5, Issue 1

1 -- 2Cheemeng Tan. Special collection of synthetic biology, aiming for quantitative control of cellular systems
3 -- 24Krishna Choudhary, Fei Deng, Sharon Aviran. Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions
25 -- 41Yijun Guo, Bing Wei, Shiyan Xiao, Dongbao Yao, Hui Li, Huaguo Xu, Tingjie Song, Xiang Li, Haojun Liang. Recent advances in molecular machines based on toehold-mediated strand displacement reaction
42 -- 54Russell Brown, Andreas Lengeling, Baojun Wang. Phage engineering: how advances in molecular biology and synthetic biology are being utilized to enhance the therapeutic potential of bacteriophages
55 -- 66Mehdi Sadeghpour, Alan Veliz-Cuba, Gábor Orosz, Kresimir Josic, Matthew R. Bennett. Bistability and oscillations in co-repressive synthetic microbial consortia
67 -- 75Jingwen Guan, Xu Shi, Roberto Burgos, Lanying Zeng. Visualization of phage DNA degradation by a type I CRISPR-Cas system at the single-cell level
76 -- 89Keith C. Heyde, MaryJoe K. Rice, Sung-Ho Paek, Felicia Y. Scott, Ruihua Zhang, Warren C. Ruder. Modeling information exchange between living and artificial cells
90 -- 98Hailin Meng, Yingfei Ma, Guoqin Mai, Yong Wang, Chenli Liu. Construction of precise support vector machine based models for predicting promoter strength
99 -- 104Weizhong Tu, Shaozhen Ding, Ling Wu, Zhe Deng, Hui Zhu, Xiaotong Xu, Chen Lin, Chaonan Ye, Minlu Han, Mengna Zhao, Juan Liu, Zixin Deng, Junni Chen, Dong-Qing Wei, Qian-Nan Hu. SynBioEcoli: a comprehensive metabolism network of engineered E. coli in three dimensional visualization
105 -- 109Junbiao Dai, Yizhi Cai, Yinjing Yuan, Huanming Yang, Jef D. Boeke. Whole genome synthesis: from poliovirus to synthetic yeast